Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1240 ATGAGAAATCGTATTCTCTTCTTATGCGCTCTCATTGCACTTGCCCCCACTTTCTCTCTCCACTCTCAACCTCACGCTGCTCCTGCAGGGCCGTTGATTAAGCATCTGTCTTCCCTCATCAAATGGACAAGGTCTACCTCCAAGACGCCACACTCAGATGGGAATGTTcttcaatttgaaaatggttACGTGGTTGAGACTGTTGTGGAAGGAAACGAGATTGGGGTCATCCCTTACAGGATCCGTGTCTCTGAGGAGGATGGTGAACTCTTTGCTGTTGATGCAATTAATAGCAACATTGTTCGAATAACTCCGCCGTTGTCCCAATATAGTAGAGGAAGATTGGTGGCTGGGTCATTTCAGGGCTACACTGGCCATGTGGATGGAAAACCAAATGATGCTCGTTTCAATCATCCTAAAGGCATAACCGTGGATGATAAGGGGAATGTTTACGTTGCTGATACTCAGAATCTGGCCATCAGAAAGATTGGTGATGCTGGTGTGACGACCATTGCTGGAGGAAAGTCAAATGTTGCAGGCTACAGGGATGGGCCTAGTGAGGATGCCAAGTTCTCAAATGATTTTGATGTGGTATATGTTCGACCCACCTGTTCCTTGTTGGTCATTGATAGAGGAAATGCTGCTCTTCGGCAAATCTCTCTTGACCAGGAGGACTGTGATTATCAGTCTAATTCAATTTCCAGTACAGATATCCTTACAGTTGTTGGTGCTGTTATAGTAGGATACGCTACATGTATGCTTCAGCAGGGATTTGGATCCTCTTTCTTCTCAAAAACACGACCATCAGAAAGAGAGTTTAAAGGGCCAGCAAGCAATGAGAAACACATGCCAATCCTGGAGAGCAGTAAAGAGGAGCCGGGATGGCCGTCTTTCGGACAGCTCATCATTGATCTTTCTAAGCTTTCCCTTGAAGCATTAGCTGGCGCATTCACTCAATTCATACCCTCACATTTCAGACCTGACAACTCCAAGAGAGGCCGAACACCACTGAAAGATCGTCTCATGATGCCTGAAGATGAAATGCAGCCTCCATTGGTCAATAGGCAAAATGCTCAAGGACATATTCCTCTTACCAAAAATAGGCTGACATCACAGGTCCATACTCCTCTTACCGAAAATCGTCTGGCATCACAGGTCCATACTCCTCTTGCCGAAAATCGTTTGGCATCACAGGTCCATACTCCAAGCACAGCTGAAAAGTATTCGGAAATGAAGCCCCCAAAGATAAAATCAAGCAGTTTCAAGGACCCTTTGTCAAGCAAACACCGGATATCAAAGCGATCTGATTATGCGGAATTCTACGGATCTGCTGAGATTCCTCCATACACCAAATCTAAGAGCCAGAAAGAAAGGCCAAGACACAGGCAACGAGAAAAGAGTGGAGAAGTTGTTATGGGGGCAGTTGGAGCTGATGCTAAACCTGTTGAGACAAGGGCTGTTGATTATAATAATCCAAAGTTTGACCATTACAGTATGAGGACTAAGTATGCATCTGAGGAGTCCTTCCGATTCAACACTCGGTAA 1545 0.4498 MRNRILFLCALIALAPTFSLHSQPHAAPAGPLIKHLSSLIKWTRSTSKTPHSDGNVLQFENGYVVETVVEGNEIGVIPYRIRVSEEDGELFAVDAINSNIVRITPPLSQYSRGRLVAGSFQGYTGHVDGKPNDARFNHPKGITVDDKGNVYVADTQNLAIRKIGDAGVTTIAGGKSNVAGYRDGPSEDAKFSNDFDVVYVRPTCSLLVIDRGNAALRQISLDQEDCDYQSNSISSTDILTVVGAVIVGYATCMLQQGFGSSFFSKTRPSEREFKGPASNEKHMPILESSKEEPGWPSFGQLIIDLSKLSLEALAGAFTQFIPSHFRPDNSKRGRTPLKDRLMMPEDEMQPPLVNRQNAQGHIPLTKNRLTSQVHTPLTENRLASQVHTPLAENRLASQVHTPSTAEKYSEMKPPKIKSSSFKDPLSSKHRISKRSDYAEFYGSAEIPPYTKSKSQKERPRHRQREKSGEVVMGAVGADAKPVETRAVDYNNPKFDHYSMRTKYASEESFRFNTR 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1240 514 SUPERFAMILY NHL repeat 59 221 - -
Ssu8g1240 514 PANTHER - 15 511 - -
Ssu8g1240 514 MobiDBLite consensus disorder prediction 395 430 - -
Ssu8g1240 514 MobiDBLite consensus disorder prediction 445 477 - -
Ssu8g1240 514 MobiDBLite consensus disorder prediction 410 430 - -
Ssu8g1240 514 Gene3D - 39 221 IPR011042 -
Ssu8g1240 514 Pfam NHL repeat 136 162 IPR001258 GO:0005515
Ssu8g1240 514 PANTHER NHL DOMAIN-CONTAINING PROTEIN 15 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1240 Ssu-Chr8 22069789 22074274 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1240 - - vra:106778116 941.414
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1240 8 22069789 22074274 Ssu8g1240 8 22069789 22074274 ECH