Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1238 ATGGAATCGGTGAAGGCATCGGCCATGACCCCGCGAAAGAAGTTGGCTCGCAGTTTCGCCAAGGTTCTTCATGTCAAAGCGCTGATTGGAATTGCCGCAGTTGACGGGCTGAAGAATGTCATATCTGATGCAAATCTCAAGGATGAAGGGAACATTGGTAAGACTACACTGAATTGGGGTGAGTCTTTCAacaaagatgatgatgatgaagagcTTCAGGAAAGAGTGGCCAATGAAGCTCTCCTAGCAAAGCTTTTTGCTAGCATTTCAACTGTTAAAGCTGCGTATGCGCAGCTACAGCATGCTCAGTCACCTTTTGAGCCTGATGGAATTGAGGCTGCTGATCGGTTGCTGGTGTCTGAGTTGAAGAACTTGTCCGAGCTAAAGCAATGCTACTTGAAGAAACAGTGTGATCCTTCGCCCAAGACAGCGATTCTCGTGGCCGAATCGAAGGAGCTGCAGGGTGTTATCAAAACCTATGAGATCATGGGGAAGAAGTTGGAGTCACAGGTGCGGCTCAAGGATTCTGAGATTATGTTTCTTAGGGAGAAGTTAGAGGAGGCTAACGGGCAGAATAAGGCAATTGAGAAGAGATTAAATCAAAGTGGCCAGCTATCTGTGCTTGATAATCTTCACATATCAGGATTAAGTCCCGGCCATTTTATCACGGTTCTTCGCCACACGGTTAGGTCCATTCGGAACTTCGTGAGGTTGGTTGTGGATGAGATGAGATCTGCAGGTTGGGATGTTGATGCCGCGGTTGGTGCCATTGAACAGAATGTGGTTTATTTTATCGAAGACCACAAGTGTTTTGCAATTGAGGCCTTTGTTTGCAGGGAAATGTTTGATGCTTTCCACTTCCCCAATTTCTCCCTTTCAAACGAGTCTCTCCCTGATAGAAGCAGGAGGCAACAGTGGTTCTTTGGGAAGTTCAATGAGCTGAAATCCATGAAGGCAAAGGACTTCCTTGCTGAGAAGCCAAGGTCATCGTTCGCGAAGTTTTGCCGGGTCAAGTATTTGAGACTTGTTCATCCCAAGATGGAGGCATCATTTTTTGGTAACACGAGTCACAGGAACCTTGTGAATGCTGGGGAGTTTCCACACACTGCATTCTTCACCTCATTTGCTGAAATGGCCAAGAGGGTATGGCTTCTACACTGCTTGGCCTTCTCATTTGAGCCTCAGGCTTCAATCTTCCAAGTGGGGAAAGGGTGTAGATTCTCTGATGTGTACATGGAAAGTGTGAATGATGAAATGTTCCTCCATTCAGACCAGGAATCAGATCCTCAAGTTGCTTTCACAGTAGTTCCGGGGTTTAGGATTGGTAAAACTGTTATACAGTGTCAAGTGTACCTCTCACAGCACCAAAGCAAGGTTAAAAAATTCACTTCCACAAAGCAAAGGTAA 1407 0.4527 MESVKASAMTPRKKLARSFAKVLHVKALIGIAAVDGLKNVISDANLKDEGNIGKTTLNWGESFNKDDDDEELQERVANEALLAKLFASISTVKAAYAQLQHAQSPFEPDGIEAADRLLVSELKNLSELKQCYLKKQCDPSPKTAILVAESKELQGVIKTYEIMGKKLESQVRLKDSEIMFLREKLEEANGQNKAIEKRLNQSGQLSVLDNLHISGLSPGHFITVLRHTVRSIRNFVRLVVDEMRSAGWDVDAAVGAIEQNVVYFIEDHKCFAIEAFVCREMFDAFHFPNFSLSNESLPDRSRRQQWFFGKFNELKSMKAKDFLAEKPRSSFAKFCRVKYLRLVHPKMEASFFGNTSHRNLVNAGEFPHTAFFTSFAEMAKRVWLLHCLAFSFEPQASIFQVGKGCRFSDVYMESVNDEMFLHSDQESDPQVAFTVVPGFRIGKTVIQCQVYLSQHQSKVKKFTSTKQR 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1238 468 Coils Coil 178 205 - -
Ssu8g1238 468 PANTHER PROTEIN GRAVITROPIC IN THE LIGHT 1 1 452 IPR040225 GO:0009639|GO:0009959
Ssu8g1238 468 Pfam Plant protein of unknown function (DUF641) 75 198 IPR006943 -
Ssu8g1238 468 PANTHER OS01G0203800 PROTEIN 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1238 Ssu-Chr8 22006879 22008285 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1238 - - gmx:100810236 816.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1238 8 22006879 22008285 Ssu8g1238 8 22006879 22008285 ECH