Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1226 ATGTGGCATTCATTTGATGTTATACTGGCAGATCAAGTCTCTGTAGTTATTCCCATCTTGAAACTTAAAAGGTCAACAAAGGTTGTATTCTACTGTCATTTTCCGGACTTATTACTGGCTCAACATTCAACTTTCATTAGGAGGATGTATAGAAAACCGATAGACTATGTAGAAGAGATAACAACTGGAATGGCTGATTTGATACTTGTTAACAGCAACTTCACTGCATCTACTTTTGCGAATACTTTTAAGTATCTAGATGCTAAAGGAATTCGACCAGCTGTTCTATATCCAGCGGTTAATGTGGATCAGTTCAATGAACCCAGTTCCTTTAAGCTGAATTTTCTTTCCATCAATCGCTTTGAAAGGAAGAAGAACATACAATTAGCAATTTCAGCTTTTGCTATGCTTCACTCACCTGAAGGAGTTCTTAAGCATAAAGATATTACTAATGCTTCTTTGACTATTGCAGGTGGCTTTGACAAACGGTTGAAGGAGAATGTGGAGTACTTAGAAGAGCTTAAAGATTTAGCTGAAAAGGAAGGAGTctctaataaaataagattcatCACGTCTTGCTCTACAGCTGAAAGGAATGCACTTCTTTCGGAATGCCTGTGTGTCCTTTACACGCCAAAGGATGAGCACTTTGGAATTGTTCCTTTGGAGGCAATGGCAGCTTATAAACCTGTTATTGCATGCAATAGTGGTGGCCCTGTGGAGTCAATTAAGAATGATGTAACGGGATTCCTTTGTGGTCCTACACCACAAGAGTTTTCTTTAGCAATGGCTAAGCTCATAAATGATCCCCAGGAGGCAGAAAAAATGGGCAGAGAAGCTAGGAGGCATGTTGTTGAGTCATTCTCTACAAAGTCATTTGGCCTGCATCTAAATAGATATCTTGTTGACATTCACCGGGGAAAGGAGGATTGA 933 0.3891 MWHSFDVILADQVSVVIPILKLKRSTKVVFYCHFPDLLLAQHSTFIRRMYRKPIDYVEEITTGMADLILVNSNFTASTFANTFKYLDAKGIRPAVLYPAVNVDQFNEPSSFKLNFLSINRFERKKNIQLAISAFAMLHSPEGVLKHKDITNASLTIAGGFDKRLKENVEYLEELKDLAEKEGVSNKIRFITSCSTAERNALLSECLCVLYTPKDEHFGIVPLEAMAAYKPVIACNSGGPVESIKNDVTGFLCGPTPQEFSLAMAKLINDPQEAEKMGREARRHVVESFSTKSFGLHLNRYLVDIHRGKED 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1226 310 Pfam Glycosyl transferases group 1 114 282 IPR001296 GO:0016757
Ssu8g1226 310 PANTHER ALPHA-1,3/1,6-MANNOSYLTRANSFERASE ALG2 1 307 IPR027054 GO:0004378|GO:0006486
Ssu8g1226 310 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 4 294 - -
Ssu8g1226 310 Coils Coil 161 181 - -
Ssu8g1226 310 Gene3D Glycogen Phosphorylase B; 101 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1226 Ssu-Chr8 21833595 21836305 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1226 2 304 Glycosyltransferase AT1G78800 75.329 1.61e-174 487
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1226 K03843 - gmx:100809168 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1226 8 21833595 21836305 Ssu8g1226 8 21833595 21836305 ECH