Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1218 ATGTGTCACACTGCTCCACATGTATTGAGGACTTTGCTTTCTCATTTGACGCAGGCCATAGCTGATTACATTATTTTCCAAGTGGAGTCTGGGGCTCACTGcatacaaatatttgattcaTGGGGTGGACAACTACCACCTGATATGTGGGAACGCTGGTCAATGCCTTATATCAAAGAGATTGTAAGTTTGGTCAAGAAAAAATGCCCTGAGGTACCAATTGTTCTTTATATAAATGGAAATGGTGGCCTTCTCGAGCAAATGAAAGACACTGGAGTTGATGTTATAGGGCTAGACTGGACGGTGGATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTACTTATTCTCTCCTCTTCCTGCCCTGACTGAAGAAATTCAGAGGGTTGTGAGGTGTGCGGGACCTAGACGGCACATCCTTAATCTGGGACATGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCTAAGAGCTTGCAGTTTGACACACTTTTTCGAAACAATACTGCAAAAGACCCTAATCTCGTAACATAA 585 0.4342 MCHTAPHVLRTLLSHLTQAIADYIIFQVESGAHCIQIFDSWGGQLPPDMWERWSMPYIKEIVSLVKKKCPEVPIVLYINGNGGLLEQMKDTGVDVIGLDWTVDMADGRRRLGSGIGVQGNVDPAYLFSPLPALTEEIQRVVRCAGPRRHILNLGHGVLVGTPEEAVAHFFEVAKSLQFDTLFRNNTAKDPNLVT 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1218 194 Pfam Uroporphyrinogen decarboxylase (URO-D) 1 175 IPR000257 GO:0004853|GO:0006779
Ssu8g1218 194 PANTHER METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRANSFERASE RELATED 1 188 - -
Ssu8g1218 194 PANTHER UROPORPHYRINOGEN DECARBOXYLASE 1, CHLOROPLASTIC 1 188 - -
Ssu8g1218 194 Gene3D - 1 178 IPR038071 -
Ssu8g1218 194 SUPERFAMILY UROD/MetE-like 3 176 IPR038071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1218 Ssu-Chr8 21724617 21726307 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1218 K01599 - gmx:100807032 384.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1218 8 21724617 21726307 Ssu8g1218 8 21724617 21726307 ECH