Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1216 atggcTTCTCTGCCTCACCCCAAAACTTCCCTTCTTACCTTATTCTTCTCGTCCTTCACCATCATAGCTTACGGTATTGTTCCTCAGAACGAGACCTTCAAATTTGTTAACTCAGGTGAACTTGGACCCTTCATTGTTGAGTATGGTGCTGATTACCGTATGATAAGCATCTTCAACTCTCCTTTCCAAGTTGGTTTCTACAACACCACCCCAAATGCCTTCACTCTAGCCTTGCGTGTGGGACTCCAACGCTCGGAGCAGCTATTTCGTTGGGTGTGGGAGGCCAATAGAGGCAACCCAGTTGGAGAGAATGCCACTTTTTCTCTTGGCACTGAAGGGAACCTTGTGTTGGCTGATGCTGATGGTAGAATTGCTTGGCAAACCAACACTGCCGACAAGGGTGTTGTGGCCTTCAGGTTGCTTCCAAATGGTAACATGGTCCTCCTTGATGCTAAAGGTAACTTCGTTTGGCAAAGTTTTGACCACCCCACGGATACCCTTTTGGTTGGTCAGTATCTTAGAGCAAAAGGGCCATCCAAGTTGGTTAGTAGGCTTTCAGACAAGGAAAATGTAGACGGGCCTTATAGCTTGGTTTTGGAGCCTAAGGGGTTGGCCTTGTACTATAAGAGCAAGAATTCCCCTAGACCAATTCTCTATTGGTTCTCATCTGATTGGTTCTCCATTCAACAAGGCTCCTTGGAGAATGTCACCCTCGCATCTGATTCAGAGACTTTTGAAATTGGATTTGATTACCATGTGGCCAATTTTTCCACTAGTGGCAACAGAATCATTGGCAGGCCAGTGAACAATAGCACCATAACATACCTTAGGCTTGGAATTGATGGCAACATTAGGATGCACACTTACTTCCTTGATGTGCGTGATGGTGTTTGGCAAGTGACCTACACTCTATTTGATAGAGATTCTGATGAGAGTGAGTGCCAATTGCCTGAGAGATGTGGGAAATTTGGGCTATGTGAGGATAACCAATGTGTGGGTTGCCCTTTGGAAAATGGGCTATTTGGGTGGAGCAGCAATTGCACTGCCAAGCCTGTGACATCATGCAAGGCAAGTGAGTTCCACTACTACAAACTTGAAGGAGTTGAGCATTACATGAGCAAATACACCACGGGGGATAGAGTGAGTGAAAGTAACTGTGGAAACAAATGTACCAAGGACTGCAAGTGTGTTGCCTATTTCTACCACAGGGAGAACTCGAGGTGTTGGATAGCTTATGATCTGCAAACACTTACTAGAGTGGCTAATTCCTCACATGTGGGATATATTAAGGCGCCTAATTAG 1302 0.4531 MASLPHPKTSLLTLFFSSFTIIAYGIVPQNETFKFVNSGELGPFIVEYGADYRMISIFNSPFQVGFYNTTPNAFTLALRVGLQRSEQLFRWVWEANRGNPVGENATFSLGTEGNLVLADADGRIAWQTNTADKGVVAFRLLPNGNMVLLDAKGNFVWQSFDHPTDTLLVGQYLRAKGPSKLVSRLSDKENVDGPYSLVLEPKGLALYYKSKNSPRPILYWFSSDWFSIQQGSLENVTLASDSETFEIGFDYHVANFSTSGNRIIGRPVNNSTITYLRLGIDGNIRMHTYFLDVRDGVWQVTYTLFDRDSDESECQLPERCGKFGLCEDNQCVGCPLENGLFGWSSNCTAKPVTSCKASEFHYYKLEGVEHYMSKYTTGDRVSESNCGNKCTKDCKCVAYFYHRENSRCWIAYDLQTLTRVANSSHVGYIKAPN 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1216 433 Pfam D-mannose binding lectin 92 176 IPR001480 -
Ssu8g1216 433 CDD PAN_AP_plant 354 430 - -
Ssu8g1216 433 ProSiteProfiles Bulb-type lectin domain profile. 30 161 IPR001480 -
Ssu8g1216 433 PIRSF SLG 1 433 IPR035446 -
Ssu8g1216 433 PANTHER - 11 433 - -
Ssu8g1216 433 Pfam PAN-like domain 362 410 IPR003609 -
Ssu8g1216 433 SUPERFAMILY alpha-D-mannose-specific plant lectins 88 225 IPR036426 -
Ssu8g1216 433 CDD B_lectin 46 163 IPR001480 -
Ssu8g1216 433 SMART blect_4 46 163 IPR001480 -
Ssu8g1216 433 Gene3D - 55 161 IPR036426 -
Ssu8g1216 433 PANTHER SECRETED GLYCOPROTEIN EP1, PUTATIVE-RELATED 11 433 - -
Ssu8g1216 433 ProSiteProfiles PAN/Apple domain profile. 355 433 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1216 Ssu-Chr8 21711562 21712863 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1216 - - gmx:100804561 821.617
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1216 8 21711562 21712863 Ssu8g1216 8 21711562 21712863 ECH