LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu8g1213	ATGGCAAACAGGAACATGGAGAAGATGGCATCCATTGATGCACAGCTTAGGCAATTGGCTCCTGCCAAAGTGAGTGAGGATGACAAACTGATTGAGTATGATGCTCTTCTGCTGGATCGGTTCCTTGATATTCTTCAAGATTTACATGGGGAGGATCTGAAGGAAacaGTTCAAGAAGTGTATGAACTTTCAGCTGAGTATGAAGGAAAGCATGACCCTAAGAAACTGGAAGAACTTGGAAATGTTATAACCAGTTTGGATGCTGGGGACTCTATTGTTGTTGCCAAGTCCTTTTCCCACATGCTTAACTTGGCTAACTTGGCTGAAGAGGTCCAGATTGCTCGACGCAGAAGGAACAAGTTGAAGAAAGGGGATTTTGCAGATGAGAACAATGCAACTACAGAATCAGACATTGAAGAAACTCTCAAGAAACTTGTATTTGACTTGAAGAAGTCTCCTCAGGAAGTTTTTGATGCACTGAAAAACCAGACTGTTGATCTCGTGCTTACTGCTCATCCTACTCAATCAGTTCGTAGATCTTTGCTTCAAAAGCATGCAAGGATAAGGAATTGTTTGTCTCAATTGTATGCCAAAGACATTACTCCTGATGATAAGCAGGAGCTTGATGAGGCTCTACAAAGGGAGATTCAAGCTGCCTTCCGTACAGATGAAATCAGGAGGACCCCTCCAACACCACAGGATGAGATGAGAGCAGGGATGAGCTACTTCCATGAAACAATTTGGATGGGTGTTCCCAAATTTCTGCGCCGTGTTGATACGGCCTTGAAGAATATAGGGATTAATGAACGTGTTCCTTATAATGCTCCTCTTATTCAATTTTCTTCTTGGATGGGGGGTGATCGTGATGGTAATCCAAGAGTAACTCCTGAAGTGACAAGGGATGTTTGCTTATTGGCTAGAATGATGGCTGCTAATTTGTATTATTCCCAGATAGAAGATCTTATGTTTGAGCTCTCTATGTGGCGCTGCAATGATGAACTACGTGTTCGTGCAGATGAACTTCACAGGTCTTCCAAGAAAGATGAAGTTGCAAAACACTATATAGGTGTTTACCACACTCTTTCCTTAAACTTAAGGGATAGAATTTTGGAAAAGATTCCCTCAAATGAACCATATCGTGTGGTACTTGGTGAAGTAAGGGACAGGCTCTATCAGACTCGTGAGCGTTCTCGCCATTTGCTAGCTCATGGGTACTCTGACATTCCAGAGGAAGCCACTTTTACCAATGTTGAGGAGTTCCTGGAGCCTCTTGAACTGTGTTACAGATCACTGTGTGCTTGTGGTGATCGAGCAATTGCTGATGGAAGCCTTCTTGATTTCATGAGACAAGTCTCCACTTTTGGACTATCACTAGTGAGGCTTGATATCAGGCAAGAGTCAGATCGTCACACTGATGTGATGGATGCCATAACCAAACACTTGGAAATTGGCTCCTACCAGGAATGGTCTGAAGAAAAAAGACAGGAATGGTTATTATCTGAGTTGAGTGGCAAAAGACCTCTATTTGGACCTGACCTTCCCCAAACTGAAGAAATTAGAGATGTTTTGGACACATTTCATGTCATAGCAGAACTACCATCAGACAACTTTGGAGCCTATATCATATCAATGGCAACTTCACCATCTGATGTGCTGGCAGTTGAGCTTCTACAACGCGAATGCCACATCAAGCATCCATTAAGAGTTGTGCCATTGTTTGAAAAGCTTGCTGATCTAGAGGCTGCGCCTGCTGCCTTGGCGCGGTTGTTCTCGGTAGACTGGTACAGAAATAGGATCAGTGGGAAGCAAGAAGTGATGATTGGGTACTCAGATTCAGGAAAAGATGCTGGGAGGTTCTCTGCAGCATGGCAGCTATACAAGGCTCAGGAGGAACTTATAAAGGTTGCCAAGAAATTTGGTGTTAAGCTAACCATGTTCCATGGTCGTGGTGGAACTGTTGGTAGAGGAGGTGGACCTACTCATCTTGCTATTCTGTCTCAACCCCCGGACACAATCCATGGATCACTTCGTGTGACAGTCCAAGGTGAAGTAATTGAGCAATCATTTGGAGAACAACACTTGTGCTTTAGAACACTGCAACGTTTCACTGCTGCCACTCTAGAACATGGCATGCACCCCCCAATTTCTCCAAAACCAGAATGGCGTACTTTGATGGATCAGATGGCTGTCATTGCTACTGAGGAATACCGTTCTATTGTGTTCAAGGAACCGCACTTTGTTGAGTATTTCCGCCGGGCTACACCAGAGTTGGAGTATGGCAGAATGAATATTGGAAGTCGACCAGCAAAGAGAAGGCCTAGTGGAGGCATTGAAACACTGCGTGCAATACCTTGGATCTTTGCATGGACACAGACAAGGTTTCATCTTCCAGTATGGCTAGGCTTTGGAGCAgcatttaaaaaagtcattgaGAAAGATGTTAGGAATCTCAATATGCTGCAAGAGATGTTCAATCAATGGCCTTTCTTTAGGGTCACACTTGATTTGGTGGAAATGGTGTTTGCCAAAGGAGATCCAGGAATCGCCGCTCTGAATGATAGGCTCCTTGTTTCAAAGGATCTGTGGCCGTTTGGTGATCAATTGAGGAACAAATATGAAGAAACTAAGAAACTCTTACTTCAGGTGGCTGCACACAAGGAAGTTCTTGAAGGAGACCCCTACTTGAAGCAAAGACTCAGGCTTCGTGATTCTTACATTACTACCCTCAATGTTTTCCAAGCTTACACATTGAAACGTATCCGTGATCCTAACTACAATGTGAAGGTGCGCCCCCGCGTATCAAAGGAGTCTGCGGAGGCGAGCAAATCAGCTGATGAACTTGTAACACTGAACCCAACAAGTGAATATGCCCCTGGTTTGGAAGACACCCTCATTCTCACTATGAAGGGTATTGCTGCTGGCATGCAGAACACTGGTTAA	2940	0.4391	MANRNMEKMASIDAQLRQLAPAKVSEDDKLIEYDALLLDRFLDILQDLHGEDLKETVQEVYELSAEYEGKHDPKKLEELGNVITSLDAGDSIVVAKSFSHMLNLANLAEEVQIARRRRNKLKKGDFADENNATTESDIEETLKKLVFDLKKSPQEVFDALKNQTVDLVLTAHPTQSVRRSLLQKHARIRNCLSQLYAKDITPDDKQELDEALQREIQAAFRTDEIRRTPPTPQDEMRAGMSYFHETIWMGVPKFLRRVDTALKNIGINERVPYNAPLIQFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYYSQIEDLMFELSMWRCNDELRVRADELHRSSKKDEVAKHYIGVYHTLSLNLRDRILEKIPSNEPYRVVLGEVRDRLYQTRERSRHLLAHGYSDIPEEATFTNVEEFLEPLELCYRSLCACGDRAIADGSLLDFMRQVSTFGLSLVRLDIRQESDRHTDVMDAITKHLEIGSYQEWSEEKRQEWLLSELSGKRPLFGPDLPQTEEIRDVLDTFHVIAELPSDNFGAYIISMATSPSDVLAVELLQRECHIKHPLRVVPLFEKLADLEAAPAALARLFSVDWYRNRISGKQEVMIGYSDSGKDAGRFSAAWQLYKAQEELIKVAKKFGVKLTMFHGRGGTVGRGGGPTHLAILSQPPDTIHGSLRVTVQGEVIEQSFGEQHLCFRTLQRFTAATLEHGMHPPISPKPEWRTLMDQMAVIATEEYRSIVFKEPHFVEYFRRATPELEYGRMNIGSRPAKRRPSGGIETLRAIPWIFAWTQTRFHLPVWLGFGAAFKKVIEKDVRNLNMLQEMFNQWPFFRVTLDLVEMVFAKGDPGIAALNDRLLVSKDLWPFGDQLRNKYEETKKLLLQVAAHKEVLEGDPYLKQRLRLRDSYITTLNVFQAYTLKRIRDPNYNVKVRPRVSKESAEASKSADELVTLNPTSEYAPGLEDTLILTMKGIAAGMQNTG	979

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu8g1213	979	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 1.	168	179	IPR018129	-
	Ssu8g1213	979	Pfam	Phosphoenolpyruvate carboxylase	35	979	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	979	-	-
	Ssu8g1213	979	Coils	Coil	104	124	-	-
	Ssu8g1213	979	SUPERFAMILY	Phosphoenolpyruvate/pyruvate domain	33	979	IPR015813	GO:0003824
	Ssu8g1213	979	ProSitePatterns	Phosphoenolpyruvate carboxylase active site 2.	605	617	IPR033129	-
	Ssu8g1213	979	PANTHER	PHOSPHOENOLPYRUVATE CARBOXYLASE	1	979	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	Gene3D	Phosphoenolpyruvate/pyruvate domain	308	457	-	-
	Ssu8g1213	979	Hamap	Phosphoenolpyruvate carboxylase [ppc].	23	979	IPR022805	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	454	474	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	645	674	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	167	180	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	280	295	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	603	623	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	777	803	IPR021135	GO:0006099\|GO:0008964\|GO:0015977
	Ssu8g1213	979	PRINTS	Phosphoenolpyruvate carboxylase signature	220	236	IPR021135	GO:0006099\|GO:0008964\|GO:0015977

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu8g1213	Ssu-Chr8	21595035	21600488	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu8g1213	K01595		-	gmx:100805069	1810.42

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu8g1213	8	21595035	21600488	Ssu8g1213	8	21595035	21600488	ECH