Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1197 ATGGCGACTCAGATCCTCTCTCGCGTCTTCCCCAAAACCCTAACCCTAGGGCCCTTCCTGTCCcgctccctctccctctccgCGCCGCCCTCCCTCTCCGCGCTCTCCTTCCTCCGCCGACTCTCCGTCGCCGCCGTCCCCTCCCTCCGCCGCACGCTCCTCCCCGCCGTCCCGTCCCTCCGCGCCCTCTCCACACGCGCCACCACGTCCTCCCTCAACGACCCCAACCCCAACTGGTCCAACCGCCCCCCCAAGGAAACCATCCTGCTCGACGGCTGCGACTTCGAACACTGGCTCGTCGTCATGGAGAAACCCGAAGGCGACCCCACCCGCGACGAAATCATCGATAGTTACATCAAAACTTTGGGCAAGGTTATCGGAAGTGAAGAGGAAGCGAGGATGAAGATATATTCAGTTTCGACGAGGCACTACTTTGCGTTTGGGGCGCTCGTGTCTGAAGAGCTTTCTTACAAGATTAAAGAATTGCCTGGAGTTCGGTGGGTGCTTCCTGATTCTTATTTGAATGTTAAGGAGAAGGATTATGGAGGTGAGCCCTTTATTAATGGGCAAGCGGTTCCTTATGATCCCAAGTATCATGAAGAGTGGGTTAGAAACAATGCCCGGGCAAATGAGAGAAACAGGCGCAATGACAGGCCTCGTAATGCTGACAGGTCAAGAAACTTTGAGAGGAGGAGGGAAAATGTGGTGAACAGAGATATGCAAGGTAGGCCTCCTATGCCAAATCCTGGCCCTAATATGGCTGGTGCTCCTCCAAGCAATGCAGGCGGGTTCCCTCCAAACAGCGCAGGTGGGTTCCCTCCAAACAATGCAGGTGGATATGCCCCTCCCAGCAACCAGGGTGGATATGCCCCTCCAAATGCAGGTGGATATCCCCCACCAAACGCAGGTGGATATGCTCCTCCCAATGTGGCAGGCGGTTACCCTCCTCCTAATATGGGTGGAGGCCCTCCTCCTAGCATGGGCGGAGGCCCTCCTCCTAACATGGGCGGTGGCTATGGTCCCGGGGGTGGTGTGCCTCAGAATAACTACGCTGGGAACATGGGAGGGGTACCGCTAAACCAGAACACGGGAGGGTTTCAACAAAATGCAGGATGGTCAAATAATGCTCCCAGTAGGGACGTGCCAAACAGGGATATGGGAGGAGCACCTGGTGGGAACCCATATACTGCGTGA 1194 0.5536 MATQILSRVFPKTLTLGPFLSRSLSLSAPPSLSALSFLRRLSVAAVPSLRRTLLPAVPSLRALSTRATTSSLNDPNPNWSNRPPKETILLDGCDFEHWLVVMEKPEGDPTRDEIIDSYIKTLGKVIGSEEEARMKIYSVSTRHYFAFGALVSEELSYKIKELPGVRWVLPDSYLNVKEKDYGGEPFINGQAVPYDPKYHEEWVRNNARANERNRRNDRPRNADRSRNFERRRENVVNRDMQGRPPMPNPGPNMAGAPPSNAGGFPPNSAGGFPPNNAGGYAPPSNQGGYAPPNAGGYPPPNAGGYAPPNVAGGYPPPNMGGGPPPSMGGGPPPNMGGGYGPGGGVPQNNYAGNMGGVPLNQNTGGFQQNAGWSNNAPSRDVPNRDMGGAPGGNPYTA 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1197 397 MobiDBLite consensus disorder prediction 293 331 - -
Ssu8g1197 397 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 8, CHLOROPLASTIC/MITOCHONDRIAL-LIKE 1 270 - -
Ssu8g1197 397 MobiDBLite consensus disorder prediction 353 380 - -
Ssu8g1197 397 MobiDBLite consensus disorder prediction 209 238 - -
Ssu8g1197 397 MobiDBLite consensus disorder prediction 209 397 - -
Ssu8g1197 397 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 1 270 IPR039206 GO:0016554
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1197 Ssu-Chr8 21424152 21426299 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1197 - - gmx:100802590 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1197 8 21424152 21426299 Ssu8g1197 8 21424152 21426299 ECH