Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1192 ATGTCTCCCTCTATCACTTCCCATCGTATCCTCATCCTCATCCTCTGGATCGTGATCCTGTGCGGTCACGCCAACGCCCGCTTCTTCACCCGCGATCCGGTTTCCGACGGCGGCGAGGCGAAGAGGTGGGAGAGCCTGCTCCGGCTCCCGACGGCGCTGACGGGCGAGTCCTCCTGCGAGCAGACGTACGGGTTCTTACCGTGCACCACCACCGTGCTCGGAAACTTATTCCTCATCGTCGTGTATGGCTTCCTCATGTTCAAGGCCGCCACGTTCCTGTCCAACGGCAGCGAGCTTCTGCTCGAGATCCTGGGCCCCGGCATTGTTGGCGGCCTCTTCCTCCCCATCCTCGGTGCACTCCCCGACGCCATGCTCATTCTCGtgtctGGGCTTTCAGGTAGTAAAGAGACTGCTCAAAGTCAGGTATCTGTTGGAATGGGACTGCTAGCTGGGTCAACAGTGCTGCTTCTGACTATAATATGGGGGACCTGTGTAATTGTTGGCAAGTGTGACATTGAGGGTTCAATTGCAATAGATTCACGAGACACTAGGGGATTTAGTTTAACCGGTTCTGGTGTTAGTACTGATATTTGGACAAGTTATGCTGCAAGGATTATGGTTATATCTGTCATTCCATTTCTGATTGTTCAATTACCACAACTTCTCAATTCAACTTCAGGAAGGCACTTGGCTGTTTTGATTGCTCTCATTGTGTCTCTCTGTTTATTGGTTGCTTATTGTCTTTACCAGATTTTCCAGCCCTGGATACAAAAGAGGAAACTTGATTATATTAAACACAAGCATGTTATTTTAGGACTTTTGACACATTTGAAGAAGCGTTCACTGGGAAGGCTGCTGAAAGAGGATGGTGAACCTGACAAAGAAGTCATTAAAAAATTGTTTGCAACCATTGATGAAAATCAAGATGACAATCTTACTCATAATGAATTGAGAGCACTGGTTATTGGAATTGAGTTTGAGGAGATTGACCTGGATCATGATGACGCTGTAAGAAGAATCATGGATGATTTTGATACTTCTCGTGATCAACTTGTTGATCAAGAAGAATTTGTTAATGGTGTCTGTAGATGGCTTCAAAGGGCCCAGCGTTCTCGAGTTCCATCTGGTGATGCTGGTCCCCGCACAATGaagtttttaagtgattttCACACAGAAACAAAGAGGGAACATGATCTGCTGGATGTGGGGGGTCAGAGTAATGAAGATGCTGAGGGCATTGAGAATGCTAAATGGACTTCTATCAAAGCAGTGCTGTTTCTGCTACTGGGTACTATTATTGCTGCTGCATTTGCTGATCCTCTGGTTGATGTAGTGGATAACTTTTCTGATGCTACAAGTATTCCTGCTTTCTTCATTTCCTTCATTGCTCTGCCTTTAGCAACCAATTCAAGTGAAGCAGTGTCGGCAATAATTTTTGCTAGTCGTGATAAGAGGCAAACTGCCTCATTAACTTTTTCTGAgATATATGGTGCAGTGACAATGAATAATGTGCTTTGCCTATCAGTCTTTTTGGCCCTCGTTTATGCGAGGGAATTGACATGGGACTTCTCTTCAGAAGTGTTGGTTATTCTCGTCGTTTGCATTGCCTTGGGCGTCTTTGCCAGCTTCCGCACTGTCTTCCCTCTATGGACATCTATACTGGCTATCCTACTTTATCCCTTCTCCCTGGCATTGGTGTATGTTCTTGATTATGTATTTGGTTGGTCGTAG 1731 0.4552 MSPSITSHRILILILWIVILCGHANARFFTRDPVSDGGEAKRWESLLRLPTALTGESSCEQTYGFLPCTTTVLGNLFLIVVYGFLMFKAATFLSNGSELLLEILGPGIVGGLFLPILGALPDAMLILVSGLSGSKETAQSQVSVGMGLLAGSTVLLLTIIWGTCVIVGKCDIEGSIAIDSRDTRGFSLTGSGVSTDIWTSYAARIMVISVIPFLIVQLPQLLNSTSGRHLAVLIALIVSLCLLVAYCLYQIFQPWIQKRKLDYIKHKHVILGLLTHLKKRSLGRLLKEDGEPDKEVIKKLFATIDENQDDNLTHNELRALVIGIEFEEIDLDHDDAVRRIMDDFDTSRDQLVDQEEFVNGVCRWLQRAQRSRVPSGDAGPRTMKFLSDFHTETKREHDLLDVGGQSNEDAEGIENAKWTSIKAVLFLLLGTIIAAAFADPLVDVVDNFSDATSIPAFFISFIALPLATNSSEAVSAIIFASRDKRQTASLTFSEIYGAVTMNNVLCLSVFLALVYARELTWDFSSEVLVILVVCIALGVFASFRTVFPLWTSILAILLYPFSLALVYVLDYVFGWS 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1192 576 Gene3D - 412 570 IPR044880 -
Ssu8g1192 576 Gene3D - 104 275 IPR044880 -
Ssu8g1192 576 ProSitePatterns EF-hand calcium-binding domain. 345 357 IPR018247 -
Ssu8g1192 576 ProSiteProfiles EF-hand calcium-binding domain profile. 332 367 IPR002048 GO:0005509
Ssu8g1192 576 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 15 573 IPR004713 GO:0006812|GO:0008324|GO:0016021
Ssu8g1192 576 PANTHER SODIUM/CALCIUM EXCHANGER NCL 15 573 - -
Ssu8g1192 576 Pfam Sodium/calcium exchanger protein 423 567 IPR004837 GO:0016021|GO:0055085
Ssu8g1192 576 Pfam Sodium/calcium exchanger protein 77 253 IPR004837 GO:0016021|GO:0055085
Ssu8g1192 576 SMART efh_1 296 324 IPR002048 GO:0005509
Ssu8g1192 576 SMART efh_1 336 364 IPR002048 GO:0005509
Ssu8g1192 576 Gene3D - 276 389 - -
Ssu8g1192 576 ProSiteProfiles EF-hand calcium-binding domain profile. 292 327 IPR002048 GO:0005509
Ssu8g1192 576 Pfam EF-hand domain pair 294 359 IPR002048 GO:0005509
Ssu8g1192 576 ProSitePatterns EF-hand calcium-binding domain. 305 317 IPR018247 -
Ssu8g1192 576 SUPERFAMILY EF-hand 291 365 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1192 Ssu-Chr8 21287299 21292577 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1192 24 576 EF-hand Containing Proteins AT1G53210 66.432 0.0 738
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1192 - - gmx:100809896 1015.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1192 8 21287299 21292577 Ssu8g1192 8 21287299 21292577 ECH