Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1191 atgagaaacatTTCCAAAACACCACACatcatctttcttcttttattggtAATAGTTAAGGTTCAAGGTCGCCATCTTCCAAACCGCGCTACCGAATTAGTTTCAGATGGCGTTCATAATGTTCAACACAACGAAACTTCTTACTTAGTTCTCAAAGGAATTGATGATGAATCCTTTGAGGAGCAGTGCAAGCAAATGTACGGCTTCTTGCCATGTACAAATAATGTTTTTGGccatctctttcttattttggtgTATGAGTATTTGCTGTTCCATGGAGAATCATATTTGGCTAATGGAGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTATCTTTGGTGCTAGTGCTTTTCACATCCTTGGTGCCCTTCCAGAGTCCTTAATTCTTCTTGTTTCTGGACTTGTCAGCAATAGGGAGATAGCACAAGAATATGCCTTCACTGGGGTTGGTTTATTGGCTGGATCATCCATCTTGCTTCTCACAGTAGTTTGGGGAGGCTGTGTTATTGCGGGCAGCGAAGAATTTGAGCATGATTCTCGCGGTCCTAACTCAGCGCATAAAAGTCTTACAGCGTTATTGACTGGTTGTGGCATTACTACGGATTTGGAAACCAGTTACACTGCAAGAATCATGGTTTGCTCAGTCATACCACTTGCAATCATGCAAATCCCAGATTTATTCCAATTCTCTTCTGGGCTAAGAAGCGTGACCTTAGTAATTGCCCTCGTTATTACCTCCATTTTTCTGTTCCTGTACTTCGTTTACCAGATTTTTGAACCTTGGGTACAGAAAAGAAGACTGGAATATGTGAAACATGAtcatttaatattgaaaatattgcaACATGTTCAAAAGAACACCCTGCAAAGGATCTTCACCAAGAATGGGAGTCCAAATGTGAGCGCCATAAGAAGAATATATAGGGAAATAGATCAAGATGCGAGCAGTGGTATATCAGCTTCTGAAGTGAAAGACCTCCTGCTCGAAAACAAAGTAACTGAAACAAATACCGATgaggagaaagaaataaaagaggtGTTAGAAATTTTTGACCTGGATGgtgaccaaaaaataaataaggaggAATTTGTCAGTGGCTTCAAAAAATGGCTTGATCAAACTAAGCATGCTTTAGAAAAACAGTATTTTTCAAGGAAATCATTGAAAGACATATATCAGGTTTTTGGACCATGgattgaaaacaaaagaaaagaacgtGAAGGAAAGAAACAGCTTATATCTGAAATCTTAAGGCATGTTCAGAGTGATATGGTTGGTAGCCTTCTCACAGCAGATGGCAAACCTGATGAACATGCTATCAGAGGGTTGTTTGAGAAAATTGATCGCAATAGAGATAACCTCATTTCCCACTCTGAGTTGAGAGAACTAATCATGAACATCAAGTTTGTTAAAGCATCAATGGAAGTGGAAGAAGCAGTTGCGTTAGTCATTGAAGAACTTGACATTAACAAAGACCACATAATTAATGAGGAGGAATTTGTTGCTGGGTTTGAGAAATGGCTTGGCTCAACTTCAGGTCCTGCTCCTGTGTCAGATTCTGAGTCTCTAGAAGATATGTATCAGACCTGGGAAGAGGCAGACATGGTGGTGGAAGAGAAGCAAAGCAAAGCAGTAGTTGATAAATCAATATGGGCATGGTTTAAGGCCATAATATATGTGGTGCTAGGAATTGCTATGCTATCCATTTTGGCAGAGCCCCTGATAGAAAGTGTCCACAACTTCTCTAACAGTGCAGGACTCCATCCATTCTTCATGTCATTTATTCTAGTCCCCTTGGCCACAAATGCTAGAGAAGCAACTTCAGAAATCAAAGAAGCAAGCCATAAGAAGCCTAGAACTACCTCTCTTGCCATTTCTGAGATTTATGGAGGGGTGTTCATGAATAACATTCTTGGCTTCTTTGCAATCTCAATTCTGATCTATGTGCGAGAAGTCACTTGGCAATTCTCAGCTGAATTGCTGGTCGTTGCAATCGTTTGTGCGATATCGGGCTTTACTGCAAGTTTTCTCACCATTTTCCCTCTATGGTCATCCTTCTTTGCGATCCTCTTATACCCATTGTCCTTGGTTCTGGTTTTTGTACTCGACAATGTTCTCAATTATAACTAA 2133 0.3802 MRNISKTPHIIFLLLLVIVKVQGRHLPNRATELVSDGVHNVQHNETSYLVLKGIDDESFEEQCKQMYGFLPCTNNVFGHLFLILVYEYLLFHGESYLANGGEQIFKILGPGIFGASAFHILGALPESLILLVSGLVSNREIAQEYAFTGVGLLAGSSILLLTVVWGGCVIAGSEEFEHDSRGPNSAHKSLTALLTGCGITTDLETSYTARIMVCSVIPLAIMQIPDLFQFSSGLRSVTLVIALVITSIFLFLYFVYQIFEPWVQKRRLEYVKHDHLILKILQHVQKNTLQRIFTKNGSPNVSAIRRIYREIDQDASSGISASEVKDLLLENKVTETNTDEEKEIKEVLEIFDLDGDQKINKEEFVSGFKKWLDQTKHALEKQYFSRKSLKDIYQVFGPWIENKRKEREGKKQLISEILRHVQSDMVGSLLTADGKPDEHAIRGLFEKIDRNRDNLISHSELRELIMNIKFVKASMEVEEAVALVIEELDINKDHIINEEEFVAGFEKWLGSTSGPAPVSDSESLEDMYQTWEEADMVVEEKQSKAVVDKSIWAWFKAIIYVVLGIAMLSILAEPLIESVHNFSNSAGLHPFFMSFILVPLATNAREATSEIKEASHKKPRTTSLAISEIYGGVFMNNILGFFAISILIYVREVTWQFSAELLVVAIVCAISGFTASFLTIFPLWSSFFAILLYPLSLVLVFVLDNVLNYN 710
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1191 710 CDD EFh 441 505 IPR002048 GO:0005509
Ssu8g1191 710 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Ssu8g1191 710 ProSitePatterns EF-hand calcium-binding domain. 352 364 IPR018247 -
Ssu8g1191 710 Pfam Sodium/calcium exchanger protein 558 701 IPR004837 GO:0016021|GO:0055085
Ssu8g1191 710 ProSitePatterns EF-hand calcium-binding domain. 489 501 IPR018247 -
Ssu8g1191 710 Gene3D - 259 367 - -
Ssu8g1191 710 SMART efh_1 480 508 IPR002048 GO:0005509
Ssu8g1191 710 SMART efh_1 440 468 IPR002048 GO:0005509
Ssu8g1191 710 SMART efh_1 343 371 IPR002048 GO:0005509
Ssu8g1191 710 SMART efh_1 303 331 IPR002048 GO:0005509
Ssu8g1191 710 ProSiteProfiles EF-hand calcium-binding domain profile. 339 374 IPR002048 GO:0005509
Ssu8g1191 710 Pfam EF-hand domain pair 440 504 IPR002048 GO:0005509
Ssu8g1191 710 ProSiteProfiles EF-hand calcium-binding domain profile. 476 511 IPR002048 GO:0005509
Ssu8g1191 710 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 7 384 - -
Ssu8g1191 710 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 392 512 - -
Ssu8g1191 710 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 550 709 - -
Ssu8g1191 710 Gene3D - 368 508 - -
Ssu8g1191 710 CDD EFh 304 369 IPR002048 GO:0005509
Ssu8g1191 710 SUPERFAMILY EF-hand 301 511 IPR011992 -
Ssu8g1191 710 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 7 384 - -
Ssu8g1191 710 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 392 512 - -
Ssu8g1191 710 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 550 709 - -
Ssu8g1191 710 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1191 Ssu-Chr8 21265911 21275465 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1191 392 704 EF-hand Containing Proteins AT1G53210 42.638 1.97e-71 241
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1191 - - gmx:100798009 1227.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1191 8 21265911 21275465 Ssu8g1191 8 21265911 21275465 ECH