Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1188 ATGTCAAAGATAGTATGCttcattttctttgcttttgtaGTAGCGCTTCATGTTGAATGCCGTTCTCTTCGCCCCAGTGTTTCTGATGGGGTTCATGATGTTCAACCGCAAGAGTCTTATCTACAACTCAAAGACCAAAGGGTTGAATCTTCTTCTGATGGGAAATACTGTAAGCAAATGTACGGCTTCTTGCCATGTTCCAATAATATCCTTGGCCATCTCTTCCTCATTTTGGTTTATGAGTACTTGTTGTTCCATGGAGAATCATATCTGGCAGCTGGGGGTGAGCAAATCTTCAAGATTCTTGGCCCTGGTGTTTTTGGTGCTAGTGCCTTTGATGTTCTTGGTGCCCTTCCCGAGTCCTTAATTCTTCTTGTTACTGGACTTTCCAGCGACAAGGAGAGTGCACAAGAGTCTGCTTCCACTGGAGTTGGTTTGTTGGCTGGATCATCCATCTTGCTTCTGACAGTAGTGTGGGGAACCTGTGTTATCATTGGCAATCAAAAGTTGAAAGATGACTCTAACACTGGTGACTCAAATTCATCAAGTGGAGGAATAAAAGAATTACTAACTGGTTATGGTATCACTATGGATGTAGATACTAGAAAGATGGCAAGAATCATGGTTTTCTCAGTTATACCACTCATCATAATGCAGATTCCCAATTTGTTCCACTTCTCTTCCACACCACGCAATGTGACCTTGATGGTTGCTCTTATAGTTGCTGTTGTTTTTCTTATCTCATACTTCATTTACCAGGTCTTTAAACCTCAGATAGAGAAAACAAGACTGGAGTATATTAAACACGATGacttaatattaagaatttttcaaCGGGTTGAAAAACAAACTCTGCAAAAGATCCTGACCGAGGATGGGACTCCCAATGTAACTGCCATAAGTGGGCTGTATCATGAAATTAGTCAACGCGAGGGCAAGGACTTATTAGCTTCTGAAGTAAAAGAGCTGTTGTTTgggaacaaattaactgacacAAATATCAAAGAGGAACAGATAGCAGACTTGTTAAAAGTTTTTGACCGAAATGGTGACCAAATTATAACCAAGGAAGAGTTTGTCACTGGCTTAACTGAATACattaaccaaacaaagcatGCCCTGGATAGACAATACCTCCCTAAAGAATCTCTGAACAAAATGTATCAGACTTTTATCAAGCCATGGATTGAACACGTGAGAATGGAACGTGATTTGAAGCGACATCTTATATCTGAAGTCTTAAAGCATGCTCAGAATGATATGGTTGGCAGGCTGCGCAATGAGGATGGCACACCTGATAAAACTGCTATCAGAAGGTTGTTTGAGGAAATTGATGTCAACGGGGATAACCACATCTCAAGATCTGAATTGGAAAAAATAGTCAAGGGCATCCGGTTTGGCAGGGTTGTAGATGCTGAGGAGGCAGTTACAAAACTCGTTCAAGATCTTGATCTCAACCGAGATGATGAAATTAGTGAGACCGAATTTGTTGAAGGTTTAACAAAATGGATGAACTCAAATTCCAGCCAAGCTGCTAACTCAAAATCTTCATCTCATGGAATTCATCAAACCTGGGAAGATGTTGAAAAGGTAATGGAAGAGAATCAAACAAAAGGAGCATCTGCATGGTTGACGGCTATAGCATATGTGGTGCTGGGAATTACTATACTGTCTCTTCTTGCAGAACCCTTAATAGCAAGTGTCCAAAAATTCTCTGAAGCTGCAGgaatttcatcatttttcatctcatttattttagtccctctggCTACAAACTTTAGAGAAGCAACCTCAGCAATCAAAGAAGCTAGCCATAAAAAAAGCAGTAATACTTCTCAGACAATGTATGAGATTTATGGAGCAGTGTTCATGAACAACATTCTTGGCTTCGTGGTGATCTCTATTCTAATATACATGCGTGAGGTCACTTGGGAATTCTCAGTTGATGTACTAATTGTGGCAATAGTTTGTGCTGTAATGGGCCTCGCAGCTAGTTTTCGCCCCACTTTTCCTCTTTGGACATCCTTCCCTGCATACCTCATGTACCTAATAGCATTGCTTTTGGTCTTTGTTCTCAAAGATGTTATCAATTATGTTTAG 2100 0.3852 MSKIVCFIFFAFVVALHVECRSLRPSVSDGVHDVQPQESYLQLKDQRVESSSDGKYCKQMYGFLPCSNNILGHLFLILVYEYLLFHGESYLAAGGEQIFKILGPGVFGASAFDVLGALPESLILLVTGLSSDKESAQESASTGVGLLAGSSILLLTVVWGTCVIIGNQKLKDDSNTGDSNSSSGGIKELLTGYGITMDVDTRKMARIMVFSVIPLIIMQIPNLFHFSSTPRNVTLMVALIVAVVFLISYFIYQVFKPQIEKTRLEYIKHDDLILRIFQRVEKQTLQKILTEDGTPNVTAISGLYHEISQREGKDLLASEVKELLFGNKLTDTNIKEEQIADLLKVFDRNGDQIITKEEFVTGLTEYINQTKHALDRQYLPKESLNKMYQTFIKPWIEHVRMERDLKRHLISEVLKHAQNDMVGRLRNEDGTPDKTAIRRLFEEIDVNGDNHISRSELEKIVKGIRFGRVVDAEEAVTKLVQDLDLNRDDEISETEFVEGLTKWMNSNSSQAANSKSSSHGIHQTWEDVEKVMEENQTKGASAWLTAIAYVVLGITILSLLAEPLIASVQKFSEAAGISSFFISFILVPLATNFREATSAIKEASHKKSSNTSQTMYEIYGAVFMNNILGFVVISILIYMREVTWEFSVDVLIVAIVCAVMGLAASFRPTFPLWTSFPAYLMYLIALLLVFVLKDVINYV 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1188 699 CDD EFh 437 501 IPR002048 GO:0005509
Ssu8g1188 699 Gene3D - 294 373 - -
Ssu8g1188 699 ProSitePatterns EF-hand calcium-binding domain. 347 359 IPR018247 -
Ssu8g1188 699 SUPERFAMILY EF-hand 322 505 IPR011992 -
Ssu8g1188 699 ProSiteProfiles EF-hand calcium-binding domain profile. 471 506 IPR002048 GO:0005509
Ssu8g1188 699 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 6 380 - -
Ssu8g1188 699 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 540 698 - -
Ssu8g1188 699 SMART efh_1 475 503 IPR002048 GO:0005509
Ssu8g1188 699 SMART efh_1 338 366 IPR002048 GO:0005509
Ssu8g1188 699 SMART efh_1 436 464 IPR002048 GO:0005509
Ssu8g1188 699 ProSitePatterns EF-hand calcium-binding domain. 445 457 IPR018247 -
Ssu8g1188 699 Gene3D - 374 516 - -
Ssu8g1188 699 PANTHER CALCIUM-BINDING EF-HAND PROTEIN 387 521 - -
Ssu8g1188 699 ProSiteProfiles EF-hand calcium-binding domain profile. 432 467 IPR002048 GO:0005509
Ssu8g1188 699 Pfam EF-hand domain pair 435 498 IPR002048 GO:0005509
Ssu8g1188 699 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 387 521 - -
Ssu8g1188 699 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 6 380 - -
Ssu8g1188 699 PANTHER EF-HAND CALCIUM-BINDING DOMAIN CONTAINING PROTEIN 540 698 - -
Ssu8g1188 699 ProSiteProfiles EF-hand calcium-binding domain profile. 334 369 IPR002048 GO:0005509
Ssu8g1188 699 Pfam Sodium/calcium exchanger protein 92 254 IPR004837 GO:0016021|GO:0055085
Ssu8g1188 699 Pfam Sodium/calcium exchanger protein 547 690 IPR004837 GO:0016021|GO:0055085
Ssu8g1188 699 ProSitePatterns EF-hand calcium-binding domain. 484 496 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1188 Ssu-Chr8 21190213 21194537 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1188 387 692 EF-hand Containing Proteins AT1G53210 40.673 2.34e-64 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1188 - - gmx:100799062 1217.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1188 8 21190213 21194537 Ssu8g1188 8 21190213 21194537 ECH