Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1162 ATGAAAGAGGGGATAGAGAGGATGGCGGCAAGCACCAGTTCAGATGGCACAGCAGGAACACCTCTATTAAGGGTTACTGATGATGGAAGAGAAAACACAAGACCCCAAGTTGGGGGATGGTGGAACAAAGTGTTAGACATGGAAGAGGCCAAGCACCAACTCTTGTTTTCACTGCCAATGATTCTTACGAACTTGTTCTATTACTTAATCACTTTGGTTTCTGTCATGCTTGTTGGTCACCTTGGCGAGCTTCAGCTTGCTGGTGCTACTCTCGCAAACTCATGGTTCACTGTCACTGGCGTGGCTGTTATGGTTGGTTTGAGTGGGGCATTGGAAACACTGTGCGGGCAAGGATTTGGTGCAAAGGAATACCAAATGCTGGGAATTTACCTACAAGCCTCGTGcattatatctcttattttttccaTCATTATATCCATTATTTGGTTCTATACAGAACCCATCTTAGTGTTACTTCATCAATCTCATGACATTGCAAGAACATCTGCTCTTTATATGAAGTTTCTTATCCCTGGATTGTTTGCGTATAGCTTCTTACAAAACATCTTGAGGTTTATTCAAACACAATCTGTAGTGATGCCATTGGTTGTGCTCTCCTCTCTTCCAATGTTGGTTCATATTGGTATTGCATATGCCTTGGTTCAGTGGTCAGGTCTGAGTTTTAAGGGTGCACCAGTTGCAACTTCTAGTTCACTATGGATATCAATGCTATTATTGGCCATGTATGTCATGTATGCTAAGAAGTTCAAGCAGACATGGCAAGGATTTTCAATGCATTCATTCCATTACGTATTTACAAACATGAAACTAGCTCTTCCCTCTGCTGCAATGGTATGTTTGGAGTACTGGGCTTTTGAAGTTTTGGTTTTCTTAGCTGGACTACTGCCCAACTCACAGATAACAACTTCGTTGATTGCAATATGTGTAAACACAGAATTCATTGCCTACATGATCACCTATGGTCTCAGTGCGGCTGCAAGCACAAGGGTATCCAATGAATTGGGGGCAGGCAACCCGGAACGAGCTAAACATGCGATGAATGTCACTCTTAAGCTCTCTCTCCTCCTTGgtttctgttttgttttgggaCTTGGATTTGGTCACAATATCTGGATTCAGTTTTTCAGTGATAGTTCTACGATTAAAAAGGAGTTTGCTTCAGTGACTCCCTTGCTTGCCATTTCCATATTACTAGATGCTGTCCAAGGTGTCTTGTCAGGGGTGGCCAGAGGATGTGGCTGGCAGCACTTGGCTGCTTACATTAACCTTGCAACATTTTATCTTATTGGTTTACCAATATCATGTCTCCTAGGATTTAAGACCAATTTGCAGTATaagGGTTTATGGATTGGTTTGATTTGTGGGCTGCTTTGTCAAACTGGGACTCTCTTCCTTTTCACAAGGCGTGCCAAATGGTCTAAATTGGATCTCTCCCCTGGGGACAAAGATAAAGACCATCCTCTTGTTGTTTAA 1494 0.4157 MKEGIERMAASTSSDGTAGTPLLRVTDDGRENTRPQVGGWWNKVLDMEEAKHQLLFSLPMILTNLFYYLITLVSVMLVGHLGELQLAGATLANSWFTVTGVAVMVGLSGALETLCGQGFGAKEYQMLGIYLQASCIISLIFSIIISIIWFYTEPILVLLHQSHDIARTSALYMKFLIPGLFAYSFLQNILRFIQTQSVVMPLVVLSSLPMLVHIGIAYALVQWSGLSFKGAPVATSSSLWISMLLLAMYVMYAKKFKQTWQGFSMHSFHYVFTNMKLALPSAAMVCLEYWAFEVLVFLAGLLPNSQITTSLIAICVNTEFIAYMITYGLSAAASTRVSNELGAGNPERAKHAMNVTLKLSLLLGFCFVLGLGFGHNIWIQFFSDSSTIKKEFASVTPLLAISILLDAVQGVLSGVARGCGWQHLAAYINLATFYLIGLPISCLLGFKTNLQYKGLWIGLICGLLCQTGTLFLFTRRAKWSKLDLSPGDKDKDHPLVV 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1162 497 CDD MATE_eukaryotic 49 481 IPR045069 GO:0042910|GO:1990961
Ssu8g1162 497 PANTHER PROTEIN DETOXIFICATION 27 488 - -
Ssu8g1162 497 PANTHER MULTIDRUG RESISTANCE PROTEIN 27 488 - -
Ssu8g1162 497 TIGRFAM matE: MATE efflux family protein 59 456 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g1162 497 Pfam MatE 59 218 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g1162 497 Pfam MatE 280 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu8g1162 497 MobiDBLite consensus disorder prediction 1 31 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1162 Ssu-Chr8 20703212 20706491 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1162 K03327 - gmx:100816310 819.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1162 8 20703212 20706491 Ssu8g1162 8 20703212 20706491 ECH