Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1158 aTGGCAGCGGTTGGTCTGAACGGCTTAAAGGTGGGGACGACGTCGTCTCAGGCGTACCTTGAAAGCAAGGCAGTGAAGGAGACGAGAGCGTTGATGGCTGAACTGTGTCGCCATTTCTACACCCTTGGATGGGTCACAGGGACAGGTGGCAGCATCACCATGAAGGTCCACGATGACTCCATTCCCAAGCCCCAACAGCTCATACTCATGTCCCCTTCTGGTGTTCAGAAAGAAAGAATGGAGCCGGAGGACATGTATGTCTTATCACACAGTGGGTCTGTCTTGTCTGCTCCATCTCCTAAACCTTGGCCACACAAGCCTCCCAAGTGTACTGATTGTGATCCACTTTTCAGGAAGGCATATGAAATGCGTGATGCTGCGGCTGTTTTCCACAGTCATGGAATAGAATCTTGTCTCGTAACAATGATCAATCCATTATCAAAGGAGTTTCGAATCACTCACATGGAAATGATAAAAGGAATCAAGGGGCATGGTTATTATGATGAACTTGTGGTCCCCATAATTGAGAACACGGCCTACGAGTATCAGCTCACAGAATCTTTTGCTAAAGCTATTGAAGAGTACCCAAAAGCAACAGCAGTGCTTGTTCGCAACCATGGGGTATTTGTCTGGGGAGACTCATGGATCGGTGCTAAAACTCAGTCTGAGTGTTACCATTACCTCTTTGATGCTGCTCTCAAACTTCACCAAATGGGATTGGACTGGTCAACTCCAAATCACGGTCCAATACAAAGTGCAAGAAGGGGTTCAAGTATTGGTGGGGAGTCAAATGTGTCAGTTAAGGCAAGGAAATCTAATGGTGAAATTGATCCATTTCCACGTTGCATTGTTCTTGACATCGAAGGAACTACTACTCCCATATCATTTGTTTCAGAGGTTCTCTTCCCATATGCTCGTGATAATGTTGGGAGGCACCTATCTCTAACATATGATACCCCTGAGACCAAAGCTGATATCAAGCTGCTTCGTTCCCAAGTTCAAAGTGACCTTGAACAAGGGATTGCAGGTTCCGTGCCTATCCCTCCCGATGATGCTGGGAAAGAGGAAGTCATTGCTGCACTTGTTGCTAATGTGAATGCTATGATTAAAGCTGATAGAAAGATCACTGCCTTAAAAGAGTTGCAGGGTCATATATGGAGAACTGGTTATGAGAATAATGAATTGGAGGGAATAGTTTATGATGATGTACCAGAAGCTCTAGAAAAGTGGCATGCCTTGGGTATAAAGGTATACATATATTCTAGTGGTAGCAGGTTGGCTCAAAGGCTAATATTTGGAAAAACGAACCATGGGGAcctaagaaaatatatatctgGGTTTTTTGACACCACAGTGGgGAACAAAAGAGAGACACGCAGTTATGTTGAAATTTCTGAGTCACTTGGTGTTGATAAACCATCAGATATTTTATTTGTCACCGATGTATGTCAAGAAGCCACAGCTGCAAAGGCAGCAGGGTTGGAGGTGATAATTTCTATTCGACCTGGAAATGGACCCCTCCCTGACAATCATGGGTTCAAGACAATCAAATCCTTCTCGGAGATCTAA 1569 0.4417 MAAVGLNGLKVGTTSSQAYLESKAVKETRALMAELCRHFYTLGWVTGTGGSITMKVHDDSIPKPQQLILMSPSGVQKERMEPEDMYVLSHSGSVLSAPSPKPWPHKPPKCTDCDPLFRKAYEMRDAAAVFHSHGIESCLVTMINPLSKEFRITHMEMIKGIKGHGYYDELVVPIIENTAYEYQLTESFAKAIEEYPKATAVLVRNHGVFVWGDSWIGAKTQSECYHYLFDAALKLHQMGLDWSTPNHGPIQSARRGSSIGGESNVSVKARKSNGEIDPFPRCIVLDIEGTTTPISFVSEVLFPYARDNVGRHLSLTYDTPETKADIKLLRSQVQSDLEQGIAGSVPIPPDDAGKEEVIAALVANVNAMIKADRKITALKELQGHIWRTGYENNELEGIVYDDVPEALEKWHALGIKVYIYSSGSRLAQRLIFGKTNHGDLRKYISGFFDTTVGNKRETRSYVEISESLGVDKPSDILFVTDVCQEATAAKAAGLEVIISIRPGNGPLPDNHGFKTIKSFSEI 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1158 522 Gene3D - 25 249 IPR036409 -
Ssu8g1158 522 Pfam haloacid dehalogenase-like hydrolase 281 493 - -
Ssu8g1158 522 SFLD enolase-phosphatase 281 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
Ssu8g1158 522 PANTHER BIFUNCTIONAL METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE/ENOLASE-PHOSPHATASE E1-RELATED 1 522 - -
Ssu8g1158 522 Hamap Methylthioribulose-1-phosphate dehydratase [APIP]. 17 241 IPR027514 GO:0005737|GO:0019509|GO:0046872
Ssu8g1158 522 Hamap Probable bifunctional methylthioribulose-1-phosphate dehydratase/enolase-phosphatase E1. 17 522 IPR027505 -
Ssu8g1158 522 CDD HAD_EP 282 503 IPR023943 GO:0000287|GO:0019509|GO:0043874
Ssu8g1158 522 SUPERFAMILY AraD/HMP-PK domain-like 26 247 IPR036409 -
Ssu8g1158 522 Hamap Enolase-phosphatase E1 [mtnC]. 279 522 IPR023943 GO:0000287|GO:0019509|GO:0043874
Ssu8g1158 522 Gene3D - 294 389 - -
Ssu8g1158 522 Gene3D - 390 522 IPR023214 -
Ssu8g1158 522 SMART Aldolase_II_2 30 233 IPR001303 -
Ssu8g1158 522 SUPERFAMILY HAD-like 281 522 IPR036412 -
Ssu8g1158 522 Pfam Class II Aldolase and Adducin N-terminal domain 31 232 IPR001303 -
Ssu8g1158 522 TIGRFAM salvage_mtnB: methylthioribulose-1-phosphate dehydratase 32 237 IPR017714 GO:0005737|GO:0019509|GO:0046872
Ssu8g1158 522 SFLD C1.5.4: Enolase-phosphatase Like 281 521 - -
Ssu8g1158 522 TIGRFAM enolase-ppase: 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 281 521 IPR023943 GO:0000287|GO:0019509|GO:0043874
Ssu8g1158 522 PANTHER METHYLTHIORIBULOSE-1-PHOSPHATE DEHYDRATASE 1 522 IPR017714 GO:0005737|GO:0019509|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1158 Ssu-Chr8 20600446 20607759 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1158 K16054 - gmx:100796209 1012.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1158 8 20600446 20607759 Ssu8g1158 8 20600446 20607759 ECH