Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1154 ATGGCTGCTGCTGCCACTAGCTTTGGAACTACATCTGTTCTACTAAGAGCAGCTCAGGCTTTTGCAATCTCTCATTCTCATATTCTCCGCAGCAATGCCAACCTCTCTTTCCAAAGGAACCTTTCCTCTCATCTTCTCTCCGTTTCCACTTCTTCAGCTTCAGGTGTAAGCCAGACAGTACAAGCTCTAAAGGGAGAAGTTGACTTGTTACTCAAGGGAGTAGGAGAAAGAAGTGTAACAAAAGAAGTAAAACATATTCTTGAGATGGCTAGACGAGCATCATTAAAACGAGAAGTTCTCCATACAGATTTTCTAACCCCTCCAGTGCTAAAGGAATCTATGCAAGTTGTGGAAAAATTAGCAGATGTGAAAGCAATTGCTCAAGGAGGTTACCCTCAGGCTGAACGTTGTCGGATTTCTGTTGGACATCCAGAAGAACTGACCAGTGATCCAGATATTATTTCAGCATTAAGCATTACAGGGAACTTCCAGTTTGAACCTTGCTCGCACGGTGATTTCCTTGGCTCAATTCTTGGTACAGGAATTGTCAGGGAGAAACTTGGAGATATTATATTGCAGGGAGAACAGGGTGCTCAGATAATTGTTGTACCAGAACTTGTTGAATTTCTTATGTCAACACTGGTTAAGGTTCGTAATGTTCCTGTATCATGCACCAAGATACCATTAATTTCTCTTGATTATGAACCGCCAAGAACAAAATCATTCAAAACTATAGAAGCATCACTAAGAGTTGATGCAGTAGCAAGTGCTGGATTTAAGATTTCACGTTCAAAGCTAGTTGACATGATCAGCAATGGTGATGTACGTATCAACTGGATCCCTGTTACTACCAAAGGAACCACACTCAAGAGTGGAGATATTGTATCAGTTAGTGGAAAGGGAAGATTAAAGATAGGAGAAATAAACTCtacaaagaaaggaaaatttgcAGTGGAGCTCATTCGGTATTTGTAG 975 0.4021 MAAAATSFGTTSVLLRAAQAFAISHSHILRSNANLSFQRNLSSHLLSVSTSSASGVSQTVQALKGEVDLLLKGVGERSVTKEVKHILEMARRASLKREVLHTDFLTPPVLKESMQVVEKLADVKAIAQGGYPQAERCRISVGHPEELTSDPDIISALSITGNFQFEPCSHGDFLGSILGTGIVREKLGDIILQGEQGAQIIVVPELVEFLMSTLVKVRNVPVSCTKIPLISLDYEPPRTKSFKTIEASLRVDAVASAGFKISRSKLVDMISNGDVRINWIPVTTKGTTLKSGDIVSVSGKGRLKIGEINSTKKGKFAVELIRYL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1154 324 CDD S4 250 304 - -
Ssu8g1154 324 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 56 324 - -
Ssu8g1154 324 Gene3D - 243 300 IPR036986 GO:0003723
Ssu8g1154 324 SUPERFAMILY Alpha-L RNA-binding motif 108 312 - -
Ssu8g1154 324 SMART s4_6 249 309 IPR002942 GO:0003723
Ssu8g1154 324 ProSiteProfiles S4 RNA-binding domain profile. 249 309 - -
Ssu8g1154 324 Pfam Putative RNA-binding domain in YlmH 155 229 IPR040591 -
Ssu8g1154 324 Pfam S4 domain 250 295 IPR002942 GO:0003723
Ssu8g1154 324 Gene3D - 150 232 IPR012677 -
Ssu8g1154 324 PANTHER RNA-BINDING PROTEIN YLMH-RELATED 56 324 - -
Ssu8g1154 324 Gene3D - 77 142 - -
Ssu8g1154 324 TIGRFAM PS_II_S4: photosystem II S4 domain protein 79 322 IPR017506 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1154 - - gmx:100793767 572.778
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1154 8 20529730 20536008 Ssu8g1154 8 20529730 20536008 ECH