Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1145 ATGCCGGATTATACTTTCTCTCTGCCTGGTGCGGAAAATTTTGGATCAGTTAGCGGGATTGCTTCTTCTAACGGTTTCCCTTTAGtgtcaaataatttaatcaatgttGATGGTCATGGTTCTGATCTATCATATGACGACGATGACTACATTGATATTCTTTCAGAAGATTATATGGACATAGATGAGTATGCTTCATTACAGAAACACTTTGATAATGTGGATATACCTCCCGGAATTGAAGCACCTTTTACTTGGTTGCCACCAGGATATGATGTAGGTTTGAAGGAGACTGGAAATAGTATGTTGTATCCTTGGCATCATATGCAATCAAATGCTAAGAAAAGTCCCATGATGCCCTCTTCTCAGCCTTTGTCATTAGAGCCGACTAACTCTAAAATTCAAGGATCTTCAGTAGGTAGttctaacattcaaataaaaatggataaTGTTGATCACTCTTCTGGAATGGAGTTGTCTTctcaattattttctcaatctgCACCTTGTAAGAAATCAGCTACTTCAAAACCCAGAGGGCGTACTTCAAATGCTTCATTAGGATTGGAGTCATCTAAGTCTCACTGGTTTTCAGAGCCTTTCCATAGTAAAAAGAAGCCTGCTTCAACATACCATGGTTTTATTGACAATTCAGAGGCTGTGGAGCTTCCACATGCAGGCGAGCCACCATATTGGGGGCAATTTAAAAGTGCTAAGAAGGCAGCTGGCAGTAGCATTTCATCCCATTCAAATTTCATTGTACATCATGGATTATTGCATCCTCCAGGAATAGAACCAGGAAAATCTTGGTCGAAGAGTTCTCATAAAGCTAAACTATTTTCTACTCATCATAATAATATTCCTAGTCATATTTATTATCCATTTGATCCTCTTCATGCCCATCCTGAGCACGTGTTTGATCAGAACTGGGTTCACGGTTCTGCCAGAGATGGATTTAATGGAAAAGCTGTTGATGGCCCTATTATGACAATCTCTGATGAAGCCAAAGATGAAATTCTGAGGAAATTCCGAAGTTTTAAACAATTTGACACTGTTGAAGACACTTCAGATCATCACTTTATTCGCAATAATTCTTCAATGAAGCAGCCTCCCAAGAATTGGGCTAAAAAAATCCAGGAAGAGTGGAGGATTTTGGAGAAGGATTTGCCAGATTCAATATTTGTCAGAGTTTATGAGTCAAGAATGGATCTTCTAAGGGCTGTAATTATTGGAGCAGAAGGGACTCCTTATCATGAtggccttttcttttttgatgttttctttcCCAGTGGCTATCCCAATGTACCGCCGAAAGTCCACTACCACTCTGGAGGTCTTCGGCTCAATCCAAATTTGTATGGTTGTGGCAAAGTATGCCTTAGTCTGCTTAACACCTGGTCTGGCGACAAAAATGAGAAGTGGCTTCCTGGTGTTTCAACAATTCTACAGGTTCTGGTCTCTATACAAGGTCTAATTTTGAATACAAAGCCTTACTTTAATGAACCTGGATATGCACACATGAGTGGTTCAGCAAATGGTGAAAAGCAGTCCTTTCAGTATAATGAGGACACATTCATTCTATCATTGAGGACAATGGTGTATATGATGCGAAAGCCTCCAAAGAATTTTGAGGACTTTGTTGTGGGGCACTTCTGCAGCCGAGCTAGTGATATTCTGGTGGCATGTAAAGCATACATGGAAGGTGCTCAAGTTGGGTGTTTGGTCAAAGGTGGGGTTCAGGACGTTGATGAGGGTGACAGAAGCTGCTCAAAGCGGTTTCAGGAGTCTTTATCTGGAATATGA 1803 0.3894 MPDYTFSLPGAENFGSVSGIASSNGFPLVSNNLINVDGHGSDLSYDDDDYIDILSEDYMDIDEYASLQKHFDNVDIPPGIEAPFTWLPPGYDVGLKETGNSMLYPWHHMQSNAKKSPMMPSSQPLSLEPTNSKIQGSSVGSSNIQIKMDNVDHSSGMELSSQLFSQSAPCKKSATSKPRGRTSNASLGLESSKSHWFSEPFHSKKKPASTYHGFIDNSEAVELPHAGEPPYWGQFKSAKKAAGSSISSHSNFIVHHGLLHPPGIEPGKSWSKSSHKAKLFSTHHNNIPSHIYYPFDPLHAHPEHVFDQNWVHGSARDGFNGKAVDGPIMTISDEAKDEILRKFRSFKQFDTVEDTSDHHFIRNNSSMKQPPKNWAKKIQEEWRILEKDLPDSIFVRVYESRMDLLRAVIIGAEGTPYHDGLFFFDVFFPSGYPNVPPKVHYHSGGLRLNPNLYGCGKVCLSLLNTWSGDKNEKWLPGVSTILQVLVSIQGLILNTKPYFNEPGYAHMSGSANGEKQSFQYNEDTFILSLRTMVYMMRKPPKNFEDFVVGHFCSRASDILVACKAYMEGAQVGCLVKGGVQDVDEGDRSCSKRFQESLSGI 600
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1145 600 Pfam Ubiquitin-conjugating enzyme 378 518 IPR000608 -
Ssu8g1145 600 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 39-RELATED 36 599 - -
Ssu8g1145 600 CDD UBCc 376 502 IPR000608 -
Ssu8g1145 600 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 373 531 IPR000608 -
Ssu8g1145 600 SUPERFAMILY UBC-like 358 540 IPR016135 -
Ssu8g1145 600 MobiDBLite consensus disorder prediction 114 140 - -
Ssu8g1145 600 Gene3D Ubiquitin Conjugating Enzyme 332 598 IPR016135 -
Ssu8g1145 600 MobiDBLite consensus disorder prediction 113 140 - -
Ssu8g1145 600 SMART ubc_7 376 533 - -
Ssu8g1145 600 MobiDBLite consensus disorder prediction 160 189 - -
Ssu8g1145 600 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 36 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1145 Ssu-Chr8 20344126 20347488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1145 341 572 Miscellaneous Gene Families AT2G33770 58.547 5.65e-87 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1145 K10581 - gmx:100809853 1013.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1145 8 20344126 20347488 Ssu8g1145 8 20344126 20347488 ECH