Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1140 ATGGCCACCGTGCAACTCCAACCCCTAACCCTCATTCGCTCCTCCGCACTCCCTTCCGCTACCTTCTCTCCTCCGATCGCCCTCTCCGGCCGCCGGAGCTCCGCCGCGTTGCCGCGCTACGCAGGACTCAGGCTCCGGCCTGCCGCCGAGACCAGTTTTCCGACTCGCGCCGGCGCGAGAACCGCTCCTCGCGGCGGACGCGTCAAGTGCGAGGCACGAGATACCGCCGTTGAAGTGGCTCCTATTACTGAGGCAAATTGGCAATCACTTGTGCTTGAATCCGAGTCTCCTGTATTGGTTGAATTCTGGGCTCCATGGTGTGGTCCCTGCCGTATGATCCACCCGATAATTGATGAACTGGCAAAGGAATATGCTGGTAAGCTAAAGTGTTACAAACTCAATACTGATGAGAGCCCCTCAACTGCTACTCGGTATGGGATTCGAAGTATTCCAACAGTCATTATTTTCAAGAATGGTGAGAAGAAAGATACAGTTATTGGTGCTGTGCCCAAGACAACATTGACCTCAAgcatagaaaaattattgtga 549 0.5282 MATVQLQPLTLIRSSALPSATFSPPIALSGRRSSAALPRYAGLRLRPAAETSFPTRAGARTAPRGGRVKCEARDTAVEVAPITEANWQSLVLESESPVLVEFWAPWCGPCRMIHPIIDELAKEYAGKLKCYKLNTDESPSTATRYGIRSIPTVIIFKNGEKKDTVIGAVPKTTLTSSIEKLL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1140 182 CDD TRX_family 85 179 - -
Ssu8g1140 182 Pfam Thioredoxin 79 179 IPR013766 -
Ssu8g1140 182 PANTHER THIOREDOXIN M-TYPE PROTEIN 1 182 - -
Ssu8g1140 182 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Ssu8g1140 182 ProSiteProfiles Thioredoxin domain profile. 42 182 IPR013766 -
Ssu8g1140 182 PRINTS Thioredoxin family signature 106 115 - -
Ssu8g1140 182 PRINTS Thioredoxin family signature 146 157 - -
Ssu8g1140 182 PRINTS Thioredoxin family signature 98 106 - -
Ssu8g1140 182 Gene3D Glutaredoxin 79 182 - -
Ssu8g1140 182 TIGRFAM thioredoxin: thioredoxin 83 181 IPR005746 GO:0015035
Ssu8g1140 182 PANTHER GEO12009P1 1 182 - -
Ssu8g1140 182 SUPERFAMILY Thioredoxin-like 77 182 IPR036249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1140 Ssu-Chr8 20283733 20299761 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1140 K03671 - gmx:100811845 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1140 8 20283733 20299761 Ssu8g1140 8 20283733 20299761 ECH