Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1132 ATGAGGGGTCCTTTGGGTGCAGTCATAGGGAGGTACCCTTCAAGTGATGGAACCACCCATTTGGGTGGAATCATAAGGCGCAACAGAAAATGCAGAGACATAGCAGTTCTTGTCTTCTTTATAGCCTTCTGGATTGCCATGATTGTCAACTCCAGCTTTGCTTTCAACCGAGGAAACCCATTGAGGCTTACTTATGGGCTCGACTACAAAGGAAATGTGTGTGGGGACAAGCATGCAGTTATAAATCTTCGAGAATTGGAGCTCAGATACTGGCTGAATCCTAATCAGGTTTATCAAAGTGGTTTGAAGGATAGCCAATTCAAGCTGGCCAATGCCCGCAGTATATGCTTGCTGGACTGCCCTATACCTTCTGAAGATTCACTTACTTGGGTTTGTGATTATCCTGATGGAGATATCCGCGTTTCGTTTAATGATTGGATTGATATGAACTACGATTATTTTGAGTTCCTTACGCCAGAAATGAGAAACTCCTCTCTTCAACTTCAGGGCCCTTGTTATCCTGTCATATTTCCTAGTGTAAATGTTTACTGGAGTTGCCAGTTCATTGCTAGAGCATCAAATGTATCTTTAAAGCATTGGCAGCAGATGGGTGGAGTTAACATCAATGAAGACATTGTTATTGATAAGTCCATTCATGAGTATATCAATTCTCATTCAGCTGTCTTAAAGAGATACATGGCTGACATAGGAAAGGCATGGCCAGTGCTGATTGTTTGTGGAGGGATTTTACCTCTATTTCTGTCTGTGATTTGGCTGTTGCTGAGTCGGCATTTTGTTGCTGCCATGCCTTGGATTACAGTGGTTTTGTTTAATGTTCTAATAGTATCAGTTACAATATTTTTCTACCTAAAAGCTGGATGGATAGGAAATGATGCTATTTCCTCCATCATTGGTGAGCATGATCCTTACATTCATGTATTTGGCAGGGAGCTGACTCATCTACATGTTGTCACTGTCCTCATGACCTTTATCATGCTTGTTGCCATTCTTACATCAATTGCTGTTGTTCGGCGAATCCTTATTGCAACTTCTGTCCTTAAGGCAAGCATAACTTTATTATATGAAGTTGCTGCAAAAGTGATAGGAGAAGTTCAAgcacttattatttttccaatcaTACCATATGGTATTCTTGCAGTGTTCTATATGTTCTGGTTTTCTGCTGCTCTTCATTTGTTCAGCTCGGGTCAGGTTGTTCAGAATAACTGCAACTCTAACTGCTGCGCATATGACCTCTTGGAGAAAAAGGTGATCTGTGATCGGTGCTGTGGACATAGCATTCATTACACACCGCATATTGGAGCTGCCATCCTTTTTCACTTATTTGGCTGTTATTGGGCTACACAATTTTTCATAGCTTTCTCATCAACAGTGATTGCTGGATCTGTTGCCTCTTATTATTGGGCCCATGGTGAAGCATCTCCTgaaattccttttctttcagTCTTTTCCTCCATGAAGAGGCTTATGTGTTACAGTCTTGGTTCTGTGGCTCTTGGCTCTCTGACTGTGTCATTTGTTGAGTCGATCCGCTTTCTGCTTGAATCTATTCGCCGGAAACTAAAACTCTCCAGTCATGTGCCTGATAGCTGGATTAGCAAGGCTTCTTACCAATCTTCTCAATGCTTCCGAAGGTGTATTGAGTGGACCATCAAATCAGTGAACCGAAATGCTTACATCATGATTGCGATAACGGGTAAAAGTTTCTTTAGAGCTTCTGCTATTGCGACAGAATTGATCATGAATAACATCCTAAGGATTGGACGTGTCAATGTGATTGGAgatgttattttgtttcttggaAAACTATGTGTCAGCCTTGCAAGTGCTGTTTTTGCTTTCCTCATGTTGGACTCACACAAGTACAGTTCTGCACATAACAAGATCACATCTCCACTATTGCCTGTTGTGGTTTGCTGGTTTCTTGGATATATTGTTGCAACTCTTTTCTTTGCAGTTGTAGAGATGTCAATAGACACCATCATTCTCTCATTCTGCCAAGACTCTGAAGAGCATGGGACAGCACAGTATGCTCCACCACTTCTCATTGAAACTCTTGGGGACCAAAATGAGATGCAGAGACTTACACAAGGGCCCCAATGA 2124 0.4077 MRGPLGAVIGRYPSSDGTTHLGGIIRRNRKCRDIAVLVFFIAFWIAMIVNSSFAFNRGNPLRLTYGLDYKGNVCGDKHAVINLRELELRYWLNPNQVYQSGLKDSQFKLANARSICLLDCPIPSEDSLTWVCDYPDGDIRVSFNDWIDMNYDYFEFLTPEMRNSSLQLQGPCYPVIFPSVNVYWSCQFIARASNVSLKHWQQMGGVNINEDIVIDKSIHEYINSHSAVLKRYMADIGKAWPVLIVCGGILPLFLSVIWLLLSRHFVAAMPWITVVLFNVLIVSVTIFFYLKAGWIGNDAISSIIGEHDPYIHVFGRELTHLHVVTVLMTFIMLVAILTSIAVVRRILIATSVLKASITLLYEVAAKVIGEVQALIIFPIIPYGILAVFYMFWFSAALHLFSSGQVVQNNCNSNCCAYDLLEKKVICDRCCGHSIHYTPHIGAAILFHLFGCYWATQFFIAFSSTVIAGSVASYYWAHGEASPEIPFLSVFSSMKRLMCYSLGSVALGSLTVSFVESIRFLLESIRRKLKLSSHVPDSWISKASYQSSQCFRRCIEWTIKSVNRNAYIMIAITGKSFFRASAIATELIMNNILRIGRVNVIGDVILFLGKLCVSLASAVFAFLMLDSHKYSSAHNKITSPLLPVVVCWFLGYIVATLFFAVVEMSIDTIILSFCQDSEEHGTAQYAPPLLIETLGDQNEMQRLTQGPQ 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1132 707 Pfam Plasma-membrane choline transporter 327 677 IPR007603 GO:0022857|GO:0055085
Ssu8g1132 707 PANTHER PLASMA-MEMBRANE CHOLINE TRANSPORTER FAMILY PROTEIN 3 704 - -
Ssu8g1132 707 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 3 704 IPR007603 GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1132 Ssu-Chr8 20081804 20091317 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1132 K15377 - gmx:100789185 1308.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1132 8 20081804 20091317 Ssu8g1132 8 20081804 20091317 ECH