Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1129 atggcgaagaagaaggagaagaaggtgAACGTCTCCGGAAAACCGAAGCACTCTCTCGACGTGAACCGCAGCAATGACGCGAAGAAGGAGTCGCGATCCGCCGCCACCGTGCGCCGCCTCAAGATGTACAACACCAGGCCCGTCCGCGACCGCAGGGGAAAAGTCGTTTCCAACGAGTTTCAGTCCAAGGAGCTTCCCAGCACGCGAATCCAACCCGATCGTCGATGGTTCGGGAACACTCGTGTTGTGAATCAGAAGGAGCTCGAGTTCTTCCGAGAAGAGCTGCAGAACCGCATGTCGAGCAATTACAATGTGATTCTGAAGGAGAAGAAACTGCCGCTGTCACTGCTTAATGATCACCAGAAGCAAGCTAGGGTTCACCTGCTTGATAGAGAGCCTTTCAAAGATGCATTTGGACCTAAGACTAAGAGAAAGCGCCCCAGCCTCTTTGTGGCTGATTATGAGTCCTTACTGAAGAAAGCTGATGGTTCTCAAGAGGCTTTTGAACAGAAGTATGCTTCTAGTGTATCTGCAGAAGCTAATGATGGAGATGGATTTAGAGATTTAGTGCGGCATACCATGTTTGAAAAGGGTCAAAGTAAACGAATATGGGGTGAGCTTTACAAAGTGATAGATTCTTCGGATGTTGTTGTCCAGGTTCTAGATGCAAGGGACCCACAAGGTACGCGATGTTACCATTTAGAGAAGCATTTGAAGGAAAATTGTAAGCACAAACACATGGTGCTTTTATTGAACAAGTGTGATCTAGTTCCTGCTTGGGCAACAAAAGGATGGCTTAGAGTTTTGTCAAAGGAATTTCCAACCCTAGCATTCCATGCAAACATTAACAAGTCATTTGGAAAAGGTTCACTTCTATCAGTTCTGAGACAATTTGCTCGATTGAAACGTGATAAGCAAGCAATATCTGTTGGATTTGTTGGATATCCAAATGTTGGGAAGTCATCAGTAATCAACACATTGCGTACAAAGAATGTCTGCAAGGTTGCTCCAATTCCAGGGGAAACAAAAGTCTGGCAGTATATAACCCTTACAAAGAGGATATTTCTGATTGATTGTCCAGGTGTTGTCTACCACAACAATGATTCTGAAACAGATGTTGTGTTGAAGGGTGTGGTACGTGTAACGAACTTGCAAGATGCTGCAGACCATATAGGTGAGGTTTTGAAACGCGTGAAGAAAGAGCATTTGGAGAGAGCATATAGAATAAAAGAATGGGATGATGAAAATGATTTCTTACTGCAGCTTTGCAAATCAACTGGCAAACTTCTGAAGGGTGGTGAGCCTGACCTTATGACTGCAGCAAAGATGATACTTCATGACTGGCAGAGGGGTAGAATTCCCTTTTTTGTTCCTCCTCCAAGGCAGGATGTCTTGTCTGAGGAACCTAATGTTAATGGTGTTAACTTAGATGATGCAGTTGATGGTAATGAGGCATCTGCTGCTATTAAGGCTATCGCAGATGTTCTTTCATCGCAGCAGCAAACAAGTGTACCTGTTCAAAAGGATTTATTTAGTGAGAATGAGTTGAAGGGGGAAGATACTGACCAACTTCCAAACTCTAATGCATACAAAGATTTTCTGACCCCTGATAGTAATACATCTGAACAGGAGCCAGCTACTAAGATTCCATCTGAGCAACTTCTTTCTGCTGAGCTGGTCCCAACCAGTGAGGCATAA 1698 0.4352 MAKKKEKKVNVSGKPKHSLDVNRSNDAKKESRSAATVRRLKMYNTRPVRDRRGKVVSNEFQSKELPSTRIQPDRRWFGNTRVVNQKELEFFREELQNRMSSNYNVILKEKKLPLSLLNDHQKQARVHLLDREPFKDAFGPKTKRKRPSLFVADYESLLKKADGSQEAFEQKYASSVSAEANDGDGFRDLVRHTMFEKGQSKRIWGELYKVIDSSDVVVQVLDARDPQGTRCYHLEKHLKENCKHKHMVLLLNKCDLVPAWATKGWLRVLSKEFPTLAFHANINKSFGKGSLLSVLRQFARLKRDKQAISVGFVGYPNVGKSSVINTLRTKNVCKVAPIPGETKVWQYITLTKRIFLIDCPGVVYHNNDSETDVVLKGVVRVTNLQDAADHIGEVLKRVKKEHLERAYRIKEWDDENDFLLQLCKSTGKLLKGGEPDLMTAAKMILHDWQRGRIPFFVPPPRQDVLSEEPNVNGVNLDDAVDGNEASAAIKAIADVLSSQQQTSVPVQKDLFSENELKGEDTDQLPNSNAYKDFLTPDSNTSEQEPATKIPSEQLLSAELVPTSEA 565
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1129 565 Pfam NGP1NT (NUC091) domain 42 166 IPR012971 -
Ssu8g1129 565 MobiDBLite consensus disorder prediction 513 565 - -
Ssu8g1129 565 PANTHER NUCLEOLAR GTP-BINDING PROTEIN 2 2 542 IPR024929 GO:0005730
Ssu8g1129 565 ProSiteProfiles Circularly permuted (CP)-type guanine nucleotide-binding (G) domain profile. 204 365 IPR030378 GO:0005525
Ssu8g1129 565 PRINTS GTP1/OBG GTP-binding protein family signature 310 330 IPR006073 GO:0005525
Ssu8g1129 565 PRINTS GTP1/OBG GTP-binding protein family signature 356 371 IPR006073 GO:0005525
Ssu8g1129 565 Pfam 50S ribosome-binding GTPase 310 412 IPR006073 GO:0005525
Ssu8g1129 565 PANTHER GTP-BINDING PROTEIN-RELATED 2 542 - -
Ssu8g1129 565 Gene3D - 194 364 IPR027417 -
Ssu8g1129 565 MobiDBLite consensus disorder prediction 1 36 - -
Ssu8g1129 565 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 435 IPR027417 -
Ssu8g1129 565 CDD NGP_1 206 362 - -
Ssu8g1129 565 MobiDBLite consensus disorder prediction 521 565 - -
Ssu8g1129 565 Gene3D - 365 457 IPR023179 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1129 Ssu-Chr8 20034786 20040138 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1129 K14537 - gmx:100781028 1026.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1129 8 20034786 20040138 Ssu8g1129 8 20034786 20040138 ECH