Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1123 ATGGATCGATTGCTGAAAGCGGCGAGAGCCTCCGGTTCTCTCAACCTCTCCAATCGCTCCCTCAAAGAAGTTCCTGACGAGGTTTACCGGAATCTGGAGGGCCTCGGCGGCGAAGACAAGTGGTGGGAGGCTGTGGAGCTTCAGAAGCTTATTCTGGCTCACAACAGCATTGAATCGTTGAAGGATGATCTGAGAAATTTGCCTTTTCTTGCTGTGTTGAATCTGACCCACAACTGTCTCTCTCAGCTTCCCGCTGCTATAGGAGAGCTGCCTCAGTTGAAGTTGTTGGATGTTTCGTTCAATTCGATAGTTAGAATACCGGAGGAGATTGGATCGGCTGCATCGCTTGTGAAGCTTGATTGTTCAAATAATCGGCTCACGGAACTTCCTAGCTCGCTTGGCAGATGCTTAGAATTGTCGGACTTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTAGCAAATTGTTCCAAATTGTCTAAGCTAGATATGGAGGGAAACAAGCTAACAGTGATATATGAAAATCTCATTTCATCATGGACCATGCTTACTGAATTCAATGCATCAAAAAATTTGCTGAACGGGATACCAGTAAGCATTGGAGGCCTTTCACGTCTAATTCGTCTTGACCTCCATCAAAACAGAATATCAGCAATCCCTTCATCAATCATCGGTTGTCATTCACTGACCGAGCTTTATTTGGGGAATAACAATATTTCTATGGTACCAGTGGAGATAGGGGCCCTTTCTCAACTTGGGACTTTAGTTCTTCACTCTAACCAGCTGAAGGACTATCCCGTAGAGGCATGCAAATTGAGTCTTTTAGTCTTGGATCTTTCTAATAATTCATTGAGTGGGTTACCCCCTGAAATGGGCAAGATGACTACATTGAGGAAACTTTTGCTTAGTGGAAATCCTTTGAGAACTCTTCGAAGCTCATTAGTATCTGGACCTACACCAGCGTTACTGAAATTTCTCCAAAGCAGACTTTCTGAAGATGAAGATTCTGAAGCTGTAACCACAACAAAAGAAGAGGTGATTGCAATGGCTACCCGATTGTCTCTCACTTCAAAGGAACTTTCTATGGAAGGGCTGGGGTTGAGTGCAGTCCCATCAGAAGTATGGGAATCAGGGGAGGTCATAAAACTTAATCTTTCCAGAAACTCCATCCAGGAGTTGCCAGTTGAACTTTCTTCTTGTGTTTCCCTCCAGACACTGATTTTAtctaagaatcaaattaaagaCTGGCCAGGTTCAATTCTTAAATCACTTTCGAGTCTCTCATGTTTGAAGCTGGACAACAATCCCCTCAGACAGATACCTTCAGATGGCTTTGAAGCGGTGCCTAAGCTTCAGATCCTGGATCTTAGTGGTAATGCAGCTTCAGTACTAGATGGTCCTGCATTTTCTAGTTTGCCATACCTGCAAGAGCTTTACCTAAGAAGAATGAGGCTCAGTGAAGTTCCATCAGATATAGTGGGGTTTCTTCAGCTACAGATCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCAgtgGGGCTAAAAAATCTCACTTCTCTCAAGGAGCTTGACCTATCTGATAACAACATCTCAGTCCTTCCACCTGAGCTGGGTTTGCTGGAACCAAGCCTTCAGGCATTGAGACTTGATGGGAATCCTCTCAGAAGCATTCGAAGGACTGTCTTGGATAAAGGAACTAAAGctgttctaaaatatttgaaggacaAATTGCCAGAGCAATag 1755 0.4279 MDRLLKAARASGSLNLSNRSLKEVPDEVYRNLEGLGGEDKWWEAVELQKLILAHNSIESLKDDLRNLPFLAVLNLTHNCLSQLPAAIGELPQLKLLDVSFNSIVRIPEEIGSAASLVKLDCSNNRLTELPSSLGRCLELSDLKGSNNLIASLPEDLANCSKLSKLDMEGNKLTVIYENLISSWTMLTEFNASKNLLNGIPVSIGGLSRLIRLDLHQNRISAIPSSIIGCHSLTELYLGNNNISMVPVEIGALSQLGTLVLHSNQLKDYPVEACKLSLLVLDLSNNSLSGLPPEMGKMTTLRKLLLSGNPLRTLRSSLVSGPTPALLKFLQSRLSEDEDSEAVTTTKEEVIAMATRLSLTSKELSMEGLGLSAVPSEVWESGEVIKLNLSRNSIQELPVELSSCVSLQTLILSKNQIKDWPGSILKSLSSLSCLKLDNNPLRQIPSDGFEAVPKLQILDLSGNAASVLDGPAFSSLPYLQELYLRRMRLSEVPSDIVGFLQLQILDLSQNSLQSIPVGLKNLTSLKELDLSDNNISVLPPELGLLEPSLQALRLDGNPLRSIRRTVLDKGTKAVLKYLKDKLPEQ 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1123 584 Gene3D Ribonuclease Inhibitor 331 466 IPR032675 -
Ssu8g1123 584 PANTHER LRR RECEPTOR-LIKE KINASE 136 584 - -
Ssu8g1123 584 PANTHER LRR RECEPTOR-LIKE KINASE 14 131 - -
Ssu8g1123 584 ProSiteProfiles Leucine-rich repeat profile. 500 522 IPR001611 GO:0005515
Ssu8g1123 584 SMART LRR_bac_2 380 399 - -
Ssu8g1123 584 SMART LRR_bac_2 229 248 - -
Ssu8g1123 584 SMART LRR_bac_2 274 294 - -
Ssu8g1123 584 SMART LRR_bac_2 67 86 - -
Ssu8g1123 584 SMART LRR_bac_2 521 541 - -
Ssu8g1123 584 SMART LRR_bac_2 90 109 - -
Ssu8g1123 584 SMART LRR_bac_2 113 132 - -
Ssu8g1123 584 Pfam Leucine rich repeat 188 242 IPR001611 GO:0005515
Ssu8g1123 584 Pfam Leucine rich repeat 254 310 IPR001611 GO:0005515
Ssu8g1123 584 Pfam Leucine rich repeat 46 103 IPR001611 GO:0005515
Ssu8g1123 584 Pfam Leucine rich repeat 429 485 IPR001611 GO:0005515
Ssu8g1123 584 Pfam Leucine rich repeat 500 558 IPR001611 GO:0005515
Ssu8g1123 584 Gene3D Ribonuclease Inhibitor 1 175 IPR032675 -
Ssu8g1123 584 ProSiteProfiles Leucine-rich repeat profile. 46 68 IPR001611 GO:0005515
Ssu8g1123 584 PRINTS Leucine-rich repeat signature 521 534 - -
Ssu8g1123 584 PRINTS Leucine-rich repeat signature 277 290 - -
Ssu8g1123 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 136 584 - -
Ssu8g1123 584 SUPERFAMILY L domain-like 361 559 - -
Ssu8g1123 584 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 131 - -
Ssu8g1123 584 ProSiteProfiles Leucine-rich repeat profile. 523 544 IPR001611 GO:0005515
Ssu8g1123 584 SUPERFAMILY L domain-like 31 318 - -
Ssu8g1123 584 ProSiteProfiles Leucine-rich repeat profile. 405 426 IPR001611 GO:0005515
Ssu8g1123 584 ProSiteProfiles Leucine-rich repeat profile. 276 297 IPR001611 GO:0005515
Ssu8g1123 584 SMART LRR_typ_2 451 474 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 90 113 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 67 88 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 546 568 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 276 296 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 521 544 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 427 450 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 45 66 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 206 229 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 475 497 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 114 136 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 230 251 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 404 426 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 381 403 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 498 520 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 252 275 IPR003591 -
Ssu8g1123 584 SMART LRR_typ_2 297 320 IPR003591 -
Ssu8g1123 584 Gene3D Ribonuclease Inhibitor 467 580 IPR032675 -
Ssu8g1123 584 Gene3D Ribonuclease Inhibitor 176 270 IPR032675 -
Ssu8g1123 584 Gene3D Ribonuclease Inhibitor 271 330 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1123 49 541 Receptor kinase-like Gene Family AT4G08850 28.623 7.03e-30 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1123 - - gmx:100781571 1011.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1123 8 19974195 19983367 Ssu8g1123 8 19974195 19983367 ECH