Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1117 ATGGCTGATCGCTTCTTTCCGAACGAGATGCCACGCTGCGTGGCAGAGAACACGGACCAAACCCCAACAACAGACTCTCTCACTgcccttctctctctcccttacCAAACCCTCTCTGAAAAGTTCCAAGCGTCCGCATTTCACTTGAAACAACCGGCTCAATTTAGTAACTTTCGTGATTTTGCTATGGTGGGTCGTGTGTGTGGTGAGGGAGACATGGGGTCATGTGGGAAGCGTGTGAAGGACTATACCCTTTACACGGGGGCTCTTGGGACAGCATACCTGCTTTTCAAGGCCTACCAAGTAACCAAGGACGGGAATGACCTTAACTTGTGTTCAGAGATTGTTAAGGCTTGTGATTCTGCTTCAGCAGATTCTGGGCGTGTGACATTTATCTGTGGGCGTGCTGGTGTTTGTGCCCTTGGTGCTGTCATAGCTAAGCATACTGGTGATGAAAGGCTACTTGACTATTACCTGAGACAATTCAAAGAGATTGCAATACCTCGTGATTTGCCCTATGAGCTATTGTATGGCAGAGCAGGTTACTTATGGGCTTGTTCATTCTTAAATAAGCATATTGGGAACAACACAATACCTACTACCCACATGAGATCAGTTGTGGATGAAGTTATTACAGCTGGCAGACAATTAGGTCGCAAGGGAAGATGTCCTCTGATGTATGAATGGCATGGGAAGAAATACTGGGGTGCTGCTCATGGACTTGCAGGAATTATGCATGTTTTGATGGACATGGAACTCAAGCCAGATGAGGTGGAAGATGTCAAGGGTACGCTACGTTACATGATTAAGAATCGCTTCCCTAGTGGCAATTATCCCTCCAGTGAAGGAAGTGAAAATGACCGTCTTGTGCAGTGGTGTCATGGTGCTCCTGGAGTCACTCTTACCCTTGTAAAGGCAGCTGAGGTTTTTGGGGACAAGGAATTTTTGCAAGCGGCTGTAGGAGCAGGGGAAGTAGTATGGAAGAGGGGTCTGCTTAAGCGAGTTGGGATCTGTCATGGCATCAGTGGGAACACCTATGTCTTTCTTGCTCTTTACAGATTGACAGGAAATGAGGAATACTTGTACAGGGCCAAAGCATTTACTTGTTTCCTACTTGATAGGGCTCAAAAACTTATCTCGGAAGGAAAGATGCATGGAGGAGATCGCCCCTATTCCTTATTTGAAGGTCTTGGAGGAATGGCATATACTTGTCTAGACATGGTTGATCCACAAATGGCAAAGTTCCCAGGCTATGAACTTTGA 1263 0.4553 MADRFFPNEMPRCVAENTDQTPTTDSLTALLSLPYQTLSEKFQASAFHLKQPAQFSNFRDFAMVGRVCGEGDMGSCGKRVKDYTLYTGALGTAYLLFKAYQVTKDGNDLNLCSEIVKACDSASADSGRVTFICGRAGVCALGAVIAKHTGDERLLDYYLRQFKEIAIPRDLPYELLYGRAGYLWACSFLNKHIGNNTIPTTHMRSVVDEVITAGRQLGRKGRCPLMYEWHGKKYWGAAHGLAGIMHVLMDMELKPDEVEDVKGTLRYMIKNRFPSGNYPSSEGSENDRLVQWCHGAPGVTLTLVKAAEVFGDKEFLQAAVGAGEVVWKRGLLKRVGICHGISGNTYVFLALYRLTGNEEYLYRAKAFTCFLLDRAQKLISEGKMHGGDRPYSLFEGLGGMAYTCLDMVDPQMAKFPGYEL 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1117 420 SMART LANC_like_2 79 420 IPR007822 -
Ssu8g1117 420 Gene3D - 1 420 IPR012341 GO:0005975
Ssu8g1117 420 PANTHER LANC-LIKE PROTEIN 1 420 - -
Ssu8g1117 420 PANTHER LANC-LIKE PROTEIN GCL2 1 420 - -
Ssu8g1117 420 CDD euk_LANCL 85 416 - -
Ssu8g1117 420 Pfam Lanthionine synthetase C-like protein 80 420 IPR007822 -
Ssu8g1117 420 PRINTS LanC-like protein superfamily signature 390 407 IPR007822 -
Ssu8g1117 420 PRINTS LanC-like protein superfamily signature 289 309 IPR007822 -
Ssu8g1117 420 PRINTS LanC-like protein superfamily signature 82 100 IPR007822 -
Ssu8g1117 420 PRINTS LanC-like protein superfamily signature 335 348 IPR007822 -
Ssu8g1117 420 PRINTS LanC-like protein superfamily signature 173 188 IPR007822 -
Ssu8g1117 420 PRINTS LanC-like protein superfamily signature 234 250 IPR007822 -
Ssu8g1117 420 PRINTS Eukaryotic LanC-like protein family signature 203 218 IPR020464 -
Ssu8g1117 420 PRINTS Eukaryotic LanC-like protein family signature 351 369 IPR020464 -
Ssu8g1117 420 PRINTS Eukaryotic LanC-like protein family signature 269 284 IPR020464 -
Ssu8g1117 420 PRINTS Eukaryotic LanC-like protein family signature 306 327 IPR020464 -
Ssu8g1117 420 SUPERFAMILY LanC-like 79 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1117 Ssu-Chr8 19838035 19840892 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1117 - - gmx:100786158 762.296
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1117 8 19838035 19840892 Ssu8g1117 8 19838035 19840892 ECH