Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1116 ATGGCTCTCCAAACTGCTTCCTTGGTTCCTGCTTCTTTCTCCGTTCCTAAAGAGGGAAAGTCAAGTGTATCTCTCAAGGACTCCTCCCTGTTTGGTCTTTCATTGTCAGAACCTATCAAGGCTGACTTCAGCTCTTCTGCATTGAGGTGCAAGAGGGAATTCCAACAAAAAATTGGTGCTGTGAGGGCCGAGACAGTGGCTACAGCCACTCCAGCAGTTACTAAGTCAACACCAGAAGGCAAGAAAACATTGAGGAAGGGCAGTGTTGTGATAACTGGGGCTTCCTCTGGATTAGGCCTGGCCACTGCTAAGGCTTTGGCTGAGACAGGAAAATGGCATATAATAATGGCCTGCAGGGATTTCCTCAAAGCTTCAAGAGCTGCAAAATCTGCTGGCATAGCTAAGGAAAACTACACCATTATGCACTTGGACCTTGCCTCTCTCGACAGCGTCCGCCAATTTGTTGATAACTTCAGAAGATCAGGCATGCCACTGGATGTGCTGGTTTGCAATGCTGCTGTTTACTTGCCAACTGCTAAGGAACCCACATTCACTGCTGAAGGCTTTGAACTCAGTGTTGGAACAAACCATCTGGGGCATTTCCTCCTTGCCCGCCTGTTGCTTGAGGACTTGAACAAATCTGATTACCCTTCAAAGCGCTTGATCATTGTTGGTTCAATCACAGGGAACACAAACACGTTGGCTGGTAATGTACCTCCCAAGGCTAACCTTGGTGACTTGAGGGGACTCGCGGGTGGTTTGACTGGGCTAAACAGTTCGGCCATGATTGATGGTGGAGACTTTGATGGTGCCAAAGCATACAAGGATAGCAAAGTCTGTAATATGCTCACAATGCAAGAATTCCACAGACGATACCATGAGGAAACTGGAATCACATTTGCTTCGCTCTACCCCGGTTGCATTGCCACAACAGGCTTGTTCAGAGAGCACATTCCCTTGTTCAGAACTCTATTCCCTCCATTCCAAAAGTACATAACCAAAGGCTTTGTCTCAGAAGACGAAGCAGGAAAGAGACTTGCTCAGGTTGTGAGTGATCCAAGCCTAACAAAATCTGGTGTTTACTGGAGCTGGAATAAAGTATCTGCTTCATTTGAAAACCAGTTGTCACAGGAGGCCAGTGATGCAGAGAAGGCTCGTAAGGTCTGGGAGATTAGTGAGAAACTCGTTGGTTTGGCCTAA 1200 0.4717 MALQTASLVPASFSVPKEGKSSVSLKDSSLFGLSLSEPIKADFSSSALRCKREFQQKIGAVRAETVATATPAVTKSTPEGKKTLRKGSVVITGASSGLGLATAKALAETGKWHIIMACRDFLKASRAAKSAGIAKENYTIMHLDLASLDSVRQFVDNFRRSGMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHLGHFLLARLLLEDLNKSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDLRGLAGGLTGLNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGITFASLYPGCIATTGLFREHIPLFRTLFPPFQKYITKGFVSEDEAGKRLAQVVSDPSLTKSGVYWSWNKVSASFENQLSQEASDAEKARKVWEISEKLVGLA 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1116 399 Gene3D - 73 399 - -
Ssu8g1116 399 CDD LPOR_like_SDR_c_like 86 398 - -
Ssu8g1116 399 Pfam short chain dehydrogenase 89 231 IPR002347 -
Ssu8g1116 399 PANTHER NADPH-PROTOCHLOROPHYLLIDE OXIDOREDUCTASE 1 398 - -
Ssu8g1116 399 PANTHER - 1 398 IPR005979 GO:0016630
Ssu8g1116 399 TIGRFAM LPOR: light-dependent protochlorophyllide reductase 85 399 IPR005979 GO:0016630
Ssu8g1116 399 PRINTS Glucose/ribitol dehydrogenase family signature 88 105 IPR002347 -
Ssu8g1116 399 PRINTS Glucose/ribitol dehydrogenase family signature 296 313 IPR002347 -
Ssu8g1116 399 PRINTS Glucose/ribitol dehydrogenase family signature 163 174 IPR002347 -
Ssu8g1116 399 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 84 365 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1116 Ssu-Chr8 19834787 19836656 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1116 K00218 - gmx:100785637 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1116 8 19834787 19836656 Ssu8g1116 8 19834787 19836656 ECH