Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1112 ATGCAACGTAACATGGCAGCAATGAGCTTGTTCCAGCGCAGGTTTTTCAGCCAGCAAAGGCGAACGCAAATGTTGGCAAGGCGAGTGGTGGAGCCGTGTGACGTGTTCCTGAACCACAGGTGCAGGGACACGAAGAAAACAGTGGCCACGCTGCTCTATGACCATCTGAAGAGGCACGGGTTCAGCCCTTTCTTGGACAACAAGAACATGAAGCCGGGGGACAAACTGTTCGAGAAAATCAACAGGGCCGTTATGGAGTGCAAGATTGGCGTGGCGGTTCTCTCCCCACGCTACACCGAGTCCTACTTCTGCCTCCACGAGCTCGCACTGCTTCTCGGCTGCAATAAGAAGGTCATTCCCATCTTCTGCGACGTTAAGCCTTCTCAGCTGCGCGTAGTCAACAACCCCAAGTGGTCCGATGACGAATTTCGCCGCTTCAGATGGGCTCTTGAGGAGGTTAAGTACACCGTGGGACTCACGTTCAATTCCTCTAAAGGGAACTTGTCAGAAATTGTGAATAGTGCTTCCGACATCATCATTGGCAGCATGATAGAGCTCGAGAATGAAGAGCAGATGCAGcataaaaaattaccaattcCTCTTTAG 606 0.505 MQRNMAAMSLFQRRFFSQQRRTQMLARRVVEPCDVFLNHRCRDTKKTVATLLYDHLKRHGFSPFLDNKNMKPGDKLFEKINRAVMECKIGVAVLSPRYTESYFCLHELALLLGCNKKVIPIFCDVKPSQLRVVNNPKWSDDEFRRFRWALEEVKYTVGLTFNSSKGNLSEIVNSASDIIIGSMIELENEEQMQHKKLPIPL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1112 201 PANTHER TOLL-INTERLEUKIN-RESISTANCE (TIR) DOMAIN FAMILY PROTEIN 26 195 - -
Ssu8g1112 201 ProSiteProfiles TIR domain profile. 31 157 IPR000157 GO:0007165
Ssu8g1112 201 SUPERFAMILY Toll/Interleukin receptor TIR domain 33 157 IPR035897 -
Ssu8g1112 201 Pfam TIR domain 34 131 IPR000157 GO:0007165
Ssu8g1112 201 Gene3D - 2 154 IPR035897 -
Ssu8g1112 201 PANTHER COP1-INTERACTING PROTEIN-RELATED 26 195 - -
Ssu8g1112 201 SMART till_3 32 165 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1112 Ssu-Chr8 19705709 19706883 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1112 35 162 Miscellaneous Gene Families AT1G57670 33.333 7.02e-12 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1112 - - ccaj:109788850 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1112 8 19705709 19706883 Ssu8g1112 8 19705709 19706883 ECH