Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1048 ATGCCTGAGGCTCCTAGAGAGTGCTCCACCTTAGACTATGACCTGGCGGAGGAGAACAAGAAAATTCTGGACTTCATAGAGGATGTGACTGCGAACGCATATGAAGTCCAGGAGAACGTCCTCCGTGAAATTCTCTCCCGCAATGCAAACGTTGAGTACTTGCGTCGGCACGGTCTCAATGGCCAAACAGACCGTGACACCTTCAAGAAGCTTCTCCCTGTCATTACCTACGAGGATATCCAACCTGACATTAACCGTATCGCCAATGGTGACACCTCTCCAATCCTAacctcaaaacccatcacagAATTTCTCACCAGCTCTGGGACATCAGGGGGTGAGAGAAAGCTGATGCCAACAATTGCAGAGGAGCTAGGGAGGCGTTGTTTATTGTACAGCCTATTGATGCCTATAATGAGCCAGTTTGTTCCTGACCTAGAAAAGGGCAAAGGAATGTACCTAATGTTCATAAAATGCGAGTCAAAAACACCCGGAGGGATCGTGGCTCGCCCGGTTCTCACCAGCTATTACAAGAGCCCCTACTTTAGGGACAGACCCTATGACCCATACACAAACTACACAAGCCCAAACGAGACCGTCCTCTGTCCCGATTCCTACCAAAGCATGTACTCCCAACTCCTTTGTGGCCTTTGCCAAAACAAAGAGGTGCTCAGAGTGGGTGCCATCTTCGCCTCTGGCTTCATCCGTGCCATTCGTTTCCTCGAGAAACATTGGACCCTCTTTTGCAATGATATCAGAACAGGAACTATAAACCACTTGATCACTGACCCATCAGTGAGAGAGGCTGTGATGAGGATCCTGAAGGCTGATCCCAAGCTTGCGGATTTTATTCAAGGCGAGTGTAGCAAGGGGTCTTGGCAGGGGATCATTACCAGGCTTTGGCCCAATACAAAGTATGTGGACGTTATTGTGACGGGGACTATGGCACAGTACATTCCCACTTTGGATTACTATAGCAATGGCCTCCCACTTGTGTGCACCATGTACGCCTCTAGTGAATGTTACTTTGGGGTCAACCTCAACCCCCTTTGCAAACCCAGCCAAGTGTCTTACACCCTCATCCCCACCATGTGCTACTATGAATTCCTGCCCGTCAACCGAACCAATGAGCTCAATGCTTCTCTTCCTTCGCCAACATCTCTCAATCAGACACAACAACAAGAATTGGTGGAGCTTGTTGATGTTAAGCTTGGCCAAGAATATGAGCTCGTCGTTACAACTCATGCCGGACTTTATAGGTACAGAGTGGGTGACATACTAAGGGTGGCTGGATTCAAGAACAAGGCCCCTCAATTCAGTTTCGTTTGCAGAAAGAATGTTGTCCTGAGCATAGATTCCGACAAGACGGACGAGGTTGAGCTTCAGAACGCAATGAAGAACGCGGGGACACACTTGGTGCCGTTTGATGCACACGTGGTTGAGTACACTAGCTATGCAGACACCACCACAACAATCCCGGGGCACTATGTGTTGTACTGGGAGCTAAGCCTCAAAGGGTCAACCCCTATTCCACCCTGCGTGTATGAGGATTGTTGCCTAACAATTGAGGAGTCACTCAACAGCGTGTACCGCCAAGGCCGTGTCTCAGACAAATCAATAGGGCCCCTTGAGATCAAGATCGTGGAACAGGGCACCTTTGACAAACTCATGGACTATGCCATTAGCCTAGGGGCGTCAATTAACCAGTACAAGGCCCCAAGGTGCGTCAAGTTTGCCCCCATTGTGGAATTGTTGAACTCAAGGGTAACATCCAACTATTTCAGTCCCAAGTGTCCAAAGTGGGTTGCGGGACACAAACAGTGGATGCATCAGAATTGA 1839 0.4861 MPEAPRECSTLDYDLAEENKKILDFIEDVTANAYEVQENVLREILSRNANVEYLRRHGLNGQTDRDTFKKLLPVITYEDIQPDINRIANGDTSPILTSKPITEFLTSSGTSGGERKLMPTIAEELGRRCLLYSLLMPIMSQFVPDLEKGKGMYLMFIKCESKTPGGIVARPVLTSYYKSPYFRDRPYDPYTNYTSPNETVLCPDSYQSMYSQLLCGLCQNKEVLRVGAIFASGFIRAIRFLEKHWTLFCNDIRTGTINHLITDPSVREAVMRILKADPKLADFIQGECSKGSWQGIITRLWPNTKYVDVIVTGTMAQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPLCKPSQVSYTLIPTMCYYEFLPVNRTNELNASLPSPTSLNQTQQQELVELVDVKLGQEYELVVTTHAGLYRYRVGDILRVAGFKNKAPQFSFVCRKNVVLSIDSDKTDEVELQNAMKNAGTHLVPFDAHVVEYTSYADTTTTIPGHYVLYWELSLKGSTPIPPCVYEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEQGTFDKLMDYAISLGASINQYKAPRCVKFAPIVELLNSRVTSNYFSPKCPKWVAGHKQWMHQN 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1048 612 PANTHER - 10 609 - -
Ssu8g1048 612 Pfam GH3 auxin-responsive promoter 26 577 IPR004993 -
Ssu8g1048 612 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 10 609 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1048 Ssu-Chr8 18073741 18076693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1048 10 595 EF-hand Containing Proteins AT1G23160 49.076 0.0 579
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1048 K14487 - gmx:100797120 1143.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1048 8 18073741 18076693 Ssu8g1048 8 18073741 18076693 ECH