Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1041 ATGACCCAACAACCACCTCATCGATTTATCCCATCCATAACACATGATCAGCACATATGGTGGAAAAAATCAGAATTTGGGACAAAGGTCCCTTACGCTAGAGAAAGGGTGGTTGAGGCTTACTTATGGCCATTGTCCATGTCTTATGAACCTGAATATAGCGTAGCAAGAAAGATGGAGAGCAAATTGGTTGGATGTATCTCTCTTCTAGATGATACTTATGACGCCTACGGCACAATTGAAGAGCTTGAACTCTTTACACAAGCAATTCAAAGatGGGATATTAGTTCCATTCAATCTCTTCCAGAGAGCATGAAAGtagtatttaatgcagttgtAGAACTGTGTAATGAAATAAAGTTGACTACTGTAGAGAGTGGAAAATCAAGCATGATAACATCATTTCTTCTACTGGCAAAATTTTCCACCCAAGAGGTGTTTGATTGGATTTTGAGCGATCCAATAATCATTAAAGCTGTTTCAGTTATTGGCAGACTAGAGAATGACATATCCTCACATAAGtttgAACAACAAAGAATGCATGTTGCTTCAGCAGTTGAATGTTGCATGAAGCAATATGACATTTCACAAGAAGAGGCCTATAAATTCATTCGAAAAGAGATTGAAGATTTTTGGAAGGTTATAAATGAAGAGTGCCTTAAGTTAGACCGCATCCCAAAGTTCGTGCTTGATTGCATTCTTAATGTGGCACGTATAACTGAGCTTACGTACGAAAATTTTGAGGATAAATACACTGATGGGGAACTATTGAAAGATTACGTTGTTGCACTACTTGTGGATCCGATAAACATAGAGCAACACAAGTAG 828 0.372 MTQQPPHRFIPSITHDQHIWWKKSEFGTKVPYARERVVEAYLWPLSMSYEPEYSVARKMESKLVGCISLLDDTYDAYGTIEELELFTQAIQRWDISSIQSLPESMKVVFNAVVELCNEIKLTTVESGKSSMITSFLLLAKFSTQEVFDWILSDPIIIKAVSVIGRLENDISSHKFEQQRMHVASAVECCMKQYDISQEEAYKFIRKEIEDFWKVINEECLKLDRIPKFVLDCILNVARITELTYENFEDKYTDGELLKDYVVALLVDPINIEQHK 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1041 275 PANTHER TERPENE SYNTHASE FAMILY, METAL-BINDING DOMAIN PROTEIN 123 268 - -
Ssu8g1041 275 Pfam Terpene synthase family 2, C-terminal metal binding 130 213 - -
Ssu8g1041 275 Pfam Terpene synthase family, metal binding domain 19 129 IPR005630 GO:0000287|GO:0010333|GO:0016829
Ssu8g1041 275 PANTHER TERPENE SYNTHASE FAMILY, METAL-BINDING DOMAIN PROTEIN 20 123 - -
Ssu8g1041 275 Gene3D Farnesyl Diphosphate Synthase 129 270 IPR008949 -
Ssu8g1041 275 Gene3D Farnesyl Diphosphate Synthase 19 128 IPR008949 -
Ssu8g1041 275 PANTHER OS04G0344100 PROTEIN-RELATED 20 123 - -
Ssu8g1041 275 PANTHER OS04G0344100 PROTEIN-RELATED 123 268 - -
Ssu8g1041 275 SUPERFAMILY Terpenoid synthases 19 271 IPR008949 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1041 Ssu-Chr8 17907976 17911768 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1041 - K15803 gmx:100781367 334.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1041 8 17907976 17911768 Ssu8g1041 8 17907976 17911768 ECH