Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1037 atggaggaagCACTTAAGACGGTGAAGAGCAAAGGTCAAATTGCTTCTCCTGCAACATACTGCGTTACCGGAGCCACAGGGTATATTGGTTCATGGCTTGTGGAGGCTCTTCTTGAAAGAGGGTACACTGTTCATGCCACTGTTAGAGATCCTGAAAAGTCACTACACCTCCTCTCATTGTGGACGGGGGGTGACCGATTGAGAATTTTCAAAGCGGATTTGAATGAAGAAGGAAGTTTCGATGAGGCTGTAAAAGGCTGTGACGGCGTTTTTCATGTTGCAGCTTCAATGCAATTCAATGTGGCTGAGAAAGAAAACATTGAGGCCTATGTTCAAGCGAATATATTTGATCCTGCAATCAAAGGGACCTTAAACCTTCTAAAGTCCTGCTTGAATTCCAATTCTGTGAAAAGGGTTGTTTTCACATCTTCAATAAGTACCGTTACTGCCAAAGACAGCAATGGGAAGTGGAAACCTGTTGTTGATGAATCTTGCCAAATCCAAAATGAACATGTGTTGAAAACACAAGCAAGTGGGTGGGTTTATGCACTTTCAAAGCTTCTAACAGAAGAGGCAGCATTTATGTTTGCAAAAGAGAATGGCATTGATCTCGTGTCAGTCATAACAACCACTGTGGCAGGCCCATTCTTCTCTGCTAATGTACCATCAAGTGTTAAAGTCCTACTGTCACCAATAACAGGTGAACCTGAGTTCTTCAAGATATTATCTGCTGTAAATGCACGAATGGGATCAATTGCATTAGTTCACATTGAAGATATATGCAGTGCGCACATATTCCTAATGGAGCATTCTAAAGCAGAAGGTCGATACATATGTAGCAACCAAAGTTGTCCATTGTCTACGTTGGCTAATCTTCTTGCCAAAGAGTATTACTCAAATAAGAAATGGATTGCTgagaaaaattatgataaagttCCTTGTGAGATTTcctcaaagaaattaaaagatttggGTTTTTGTTACAAGCATGGGCTTGAAGATATAATCCATCAGACAATTATTTGTTGCCTAGATTATGGTTATTTACCTCCCATTAGACAATAG 1065 0.3869 MEEALKTVKSKGQIASPATYCVTGATGYIGSWLVEALLERGYTVHATVRDPEKSLHLLSLWTGGDRLRIFKADLNEEGSFDEAVKGCDGVFHVAASMQFNVAEKENIEAYVQANIFDPAIKGTLNLLKSCLNSNSVKRVVFTSSISTVTAKDSNGKWKPVVDESCQIQNEHVLKTQASGWVYALSKLLTEEAAFMFAKENGIDLVSVITTTVAGPFFSANVPSSVKVLLSPITGEPEFFKILSAVNARMGSIALVHIEDICSAHIFLMEHSKAEGRYICSNQSCPLSTLANLLAKEYYSNKKWIAEKNYDKVPCEISSKKLKDLGFCYKHGLEDIIHQTIICCLDYGYLPPIRQ 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1037 354 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 18 340 IPR036291 -
Ssu8g1037 354 Gene3D - 15 354 - -
Ssu8g1037 354 PANTHER NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN 16 340 - -
Ssu8g1037 354 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 16 340 - -
Ssu8g1037 354 Pfam NAD dependent epimerase/dehydratase family 21 273 IPR001509 -
Ssu8g1037 354 CDD FR_SDR_e 20 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1037 Ssu-Chr8 17786498 17795915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1037 11 340 Miscellaneous Gene Families AT4G27250 58.383 9.77e-138 393
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1037 - - ccaj:109815084 636.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1037 8 17786498 17795915 Ssu8g1037 8 17786498 17795915 ECH