Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1035 ATGGCAGGTCGAGACAAAAATGTAGGATCCAGATCTGCCAAAAAGGCCACCTCACGGAGCAGTAGAGCCGGTCTCCAATTCCCTGTCGGTCGTATCGCTCGATTCTTGAAGACCGGCAAGTATGCCGAGCGCATCGGCTCTGGCGCCCCTGTGTACCTTGCCTCTGTTCTTGAATATCTTGCTGCTGAGGTTTTGGAGTTAGCTGGAAACGCTGCAATAGACAACAAGAAGACTCGAATTGCACCTCGCCATATCCAATTAGCGATTGGGAATGATGAAGAGTTGAGCAAGCTTCTTGGAGATGTGACCATTGCCAGTGGTGGTGTGATGCCTAATATTCACAATATGTTATTACCCAAGAAGGCTGGGACCTCGAAGGGTGTTGTTTCTCGGTCACCGGAACTCGTCGATTTCCACGCTCCGCGAACCTTATCGTTCCCGCAACTAGGTTACGTTTCGCCAATGGCAGGTCGAGGCAAAACCCTAGGATCCAGCGCCGCCAAGAAGGCCACCTCCCGGAGCAGCAAAGCCGGCCTCCAATTCCCCGTCGGCCGTATCGCCAGGTTCCTCAAGGCCGGCAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTTTACCTCGCCGCCGTCCTCGAATATCTCGCCGCTGAGGTTCTGGAGTTGGCCGGAAACGCTGCGAGAGATAACAAGAAGACTCGAATTGTGCCTCGCCACATTCAATTGGCGGTTAGGAACGACGAAGAGTTGAGCAAGCTTCTCGGAGACGTTACCATCGCTAATGGTGGCGTTATGCCTAATATTCACAACCTTTTGCTTCCCAAGAAGGCTGGGGGCTCGTCGAAGGGTGCCGCTGCTGACGATGACTCTTAA 870 0.546 MAGRDKNVGSRSAKKATSRSSRAGLQFPVGRIARFLKTGKYAERIGSGAPVYLASVLEYLAAEVLELAGNAAIDNKKTRIAPRHIQLAIGNDEELSKLLGDVTIASGGVMPNIHNMLLPKKAGTSKGVVSRSPELVDFHAPRTLSFPQLGYVSPMAGRGKTLGSSAAKKATSRSSKAGLQFPVGRIARFLKAGKYAERVGAGAPVYLAAVLEYLAAEVLELAGNAARDNKKTRIVPRHIQLAVRNDEELSKLLGDVTIANGGVMPNIHNLLLPKKAGGSSKGAAADDDS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1035 289 PANTHER HISTONE H2A 2 128 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 PANTHER HISTONE H2A 156 287 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 ProSitePatterns Histone H2A signature. 23 29 IPR032458 -
Ssu8g1035 289 Pfam Core histone H2A/H2B/H3/H4 164 244 IPR007125 GO:0003677
Ssu8g1035 289 Pfam Core histone H2A/H2B/H3/H4 7 89 IPR007125 GO:0003677
Ssu8g1035 289 SUPERFAMILY Histone-fold 17 121 IPR009072 GO:0046982
Ssu8g1035 289 ProSitePatterns Histone H2A signature. 177 183 IPR032458 -
Ssu8g1035 289 Gene3D Histone, subunit A 1 129 IPR009072 GO:0046982
Ssu8g1035 289 Gene3D Histone, subunit A 155 283 IPR009072 GO:0046982
Ssu8g1035 289 PANTHER HISTONE H2A.6 2 128 - -
Ssu8g1035 289 PANTHER HISTONE H2A.6 156 287 - -
Ssu8g1035 289 CDD H2A 9 121 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 SMART h2a4 4 124 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 SMART h2a4 158 278 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 SUPERFAMILY Histone-fold 164 277 IPR009072 GO:0046982
Ssu8g1035 289 PRINTS Histone H2A signature 213 226 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 PRINTS Histone H2A signature 169 191 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 PRINTS Histone H2A signature 198 213 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 PRINTS Histone H2A signature 227 241 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 PRINTS Histone H2A signature 255 273 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 CDD H2A 163 275 IPR002119 GO:0000786|GO:0003677|GO:0030527
Ssu8g1035 289 MobiDBLite consensus disorder prediction 1 22 - -
Ssu8g1035 289 Pfam C-terminus of histone H2A 247 281 IPR032454 -
Ssu8g1035 289 Pfam C-terminus of histone H2A 93 126 IPR032454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1035 Ssu-Chr8 17748590 17753950 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1035 K11251 K11253 cmy:102945886 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1035 8 17748590 17753950 Ssu8g1035 8 17748590 17753950 ECH