Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1031 ATGAACCATCTTTCTTTCTCACACCTCACTGACTTGAGTTCCTTCACCATGGCTCCTCTCACAAACTTGCATGGAGTCTCCAAAACCTTAATTCCCATCACATGCCTTCCAAATGCACACAGGAGCTCAAAGAGAGGACAAGTAGTTGGGTTTCTAGGAAGCAAAACACAGGAGGAATCATCAGAGTGTCCAGTTCAGACTACAAGAAGAGCAGCAGCAATAGGCCTTGCCACCATAGTGCTTACATGGCAATTCAATTGCAAGATTTCATTAGCTAAAGATAATGGTTTCTGGTATGAAGATCACCCTCTTCCAGGACCAACTGTCACTAACAATATTGCAAATGAGAAAACTGGGACACGATCTTTTCTTAGAAGAGGGCTCTACATGGCAAATATTGGAGTGAAAGGAAGTGTGTATAGGATCAAGAAATATGCCTTTGATCTTCTGGCAATGGCGGATTTGATAGCAGAAGACACACTCAACTATGTGAGGAAGTACCTAAGACTCAAGTCTACCTTCATTTACTATGATTTTGACAAGGTTATCTCTGCCACTCCAGCGGATGATAAGCAGCAACTAACTGATATGGCTAAcaaattgtttgataattttgaaaGGCTTGAAGAAGCTGCAAGGAAGAAAAGTCTACCCGAAACAAAATCATGCTATCAGGAAACTGAAGTTATGCTTAAAGAGGTCATGGACCGGATGACTGAAATGTACAAAACAATTTGA 738 0.4051 MNHLSFSHLTDLSSFTMAPLTNLHGVSKTLIPITCLPNAHRSSKRGQVVGFLGSKTQEESSECPVQTTRRAAAIGLATIVLTWQFNCKISLAKDNGFWYEDHPLPGPTVTNNIANEKTGTRSFLRRGLYMANIGVKGSVYRIKKYAFDLLAMADLIAEDTLNYVRKYLRLKSTFIYYDFDKVISATPADDKQQLTDMANKLFDNFERLEEAARKKSLPETKSCYQETEVMLKEVMDRMTEMYKTI 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1031 245 Gene3D - 101 239 IPR023222 -
Ssu8g1031 245 PANTHER PHOTOSYNTHETIC NDH SUBUNIT OF LUMENAL LOCATION 3, CHLOROPLASTIC 17 238 - -
Ssu8g1031 245 Coils Coil 191 211 - -
Ssu8g1031 245 SUPERFAMILY Oxygen-evolving enhancer protein 3, 129 238 IPR023222 -
Ssu8g1031 245 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 17 238 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
Ssu8g1031 245 Pfam Oxygen evolving enhancer protein 3 (PsbQ) 41 238 IPR008797 GO:0005509|GO:0009523|GO:0009654|GO:0015979|GO:0019898
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1031 K08901 - gmx:100814163 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1031 8 17697362 17698762 Ssu8g1031 8 17697362 17698762 ECH