Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1025 ATGGAGTCAATATTGGGTCGGGCTCTGGAGTACACTCTCAAGTACTGGCTCAAGTCCTTCTCCCGAGACCAGTTCAAGTTGCAAGGCCGCACCGTTCACCTCTCCAATCTAGATATCGACGGCGACGCCTTGCATTCCAGCATCGGATTGCCGCCAGCGCTGAACGTTGCCACCGCCAAAGTCGGCAAGCTAGAGATAACACTTCCGTCGGTGAGCAATGTGCAAACGGAGCCAATCGTCGTGCATATTGATAGACTCGATCTGGTTCTCGAGGAGAATTCGGATTATGATTCATCTCTTAGTTCGAACAGTTCCACGCCGTCGGCTGCGTCAGCTAAGGGAAGTGGTTATGGTTTCGCTGATAAGATTGCAGATGGCATGACTATACAAATTCAAACAGTTAATCTATTACTTGAAACTCGTGGTGGTTCTCGTCGCCAAGGGGGAGCAACATGGGCACCCCCGATGGCATCTATCACCATTCGCAACCTTTTGCTGTATACCACAAATGAAAACTGGCAGGTTGTAAATCTTAAGGAAGTACGGGAATTCTCCAGTAACAAGAAGTACATATATGTCTTCAAAAAACTGGAATGGCAATCTTTGTCTATTGATCTTTTACCTCATCCCGACATGTTCACAGAGGCTACATTAGGCCACTCTCAAGGGGATTCAAACTTTAGGGATGATGATGGTGCAAAGCGAGTATTCTTTGGAGGAGAGCGTTTTATAGAAGGAATATCAGGAGAAGCATATATCACAATTCAGAGAACTGAGTTGAATAGCCCACTTGGGCTTGAGGTTCAATTGCACATCAATGAAGCTGTTTGCCCTGCATTAAGCGAACCAGGATTACGTGCACTTCTCCGCTTTATGACAGGAGTATATGTTTGTCTAAACAGGGGTGATGTTGATTCCAAGGTTCAGCAGCGATCCACTGAAGCAGCTGGGCGTTCTCTTGTCTCAATTGTCGTAGATCATATATTTCTTTGTATTAAAGATACTGAATTCCAGCTTGAACTTTTGATGCAGTCCCTCTTTTTTTCTCGGGCCAGTCTTTCTGAAggagataatgataataacttGACCAGGATTACAATTGGTGGATTATTTTTGAGGGACACCTTTTGTTCCCCTCCATGCATCTTAGTGCAACCATCAATGCAAGCTGTCTCAAGAGATGCTTTCCGTGTGCCAGAATTTGCCAGAAGCTTTTGCCCTCCAATATATCCTTTACAAGAACAGGAGTGGCAATTGATCGATGGAACCCCTCTAATATGCCTCCATGCTCTTAAGATCATGCCTTCTCCACTTCCACCATCTTTTGCTTCTGAAACTGTTATTGACTGTCAGCCTCTTATGattcaTCTCCAGGAAGAATCATGCCTGAGGATATCCTCTTTATTAGCTGACGGTATTGTTGTCAATCCTGGTGACATTTTACCAGATTTCTCAgtgaaatcttttattttcaatctcAAGGGACTGGATCTTACAGTTCCTTTTGACAAGACCAAATTGGACATTTCCAAAAGTGACATGGACAATACCGTCCAGACATCCTTTGCTGGAGCAAGGCTTCATAttgaaaaccttttctttttaaattcacCCTCACTGAAACTAAGAATGCTGAACCTGGAGAAGGATCCTGCTTGCTTCAGTCTCTGGGAAGGTCAACCAATTGATGCTAGCCAGAAGAAGTGGACTGCTAGAGCAGCCCATCTTACTTTGTCTCTGGAAGCATGTACTGACAGAACTGGATGTCAAAATTCCCTTGGACAGACGGCAGGATTGTGGAGATGTGTTGATCTGAAAGATGCTTGCATTGAAGTAGCTATGGCAACTGCTGATGGCAGTCCATTGTTACAAGTTCCCCCTCCCGGGGGTATTGTTAGGGTTGGAGTTGCTTGCGAACATTATCTGTCTAACACTTCTGTTGAACAATTGTTTTTTGTCCTGGATTTATATGGTTATTTTGGGAGAGTTAGTGAAAAAATAGCAATGGCCGGAAAAAGGAAACAATTGGAGGACATTACGGACAAATCCTATAGTGGAAAGCTGATGGACAAGGTTCCTAGTGATGCTGCTGTGAGTTTATCAGTGAAAAACCTCCAACTTCGATTTCTGGAGTCATCTTCTGTGAATGTTGAGGGGATGCCTTTAGTGCAGTTTGTTGGAGATGAGCTGTTCACTAGTGCCACTCATAGAACCCTTGGTGGGGCTACTATTGTTTCATCTATTTTACGTTGGGAGAGTGTTGAGATAGGTTGTGTAGATGCTGAGGGGCACTTGCCATGTGAAAATGGCTCATTCTTGAGTTCTAAGGAAAATGCTCCCTTACTGAGTGATAGTGGATATCCTCAACTAAGAGCTGTTTTCTGGGTGCATAAGAATGCAAAACATCTATTGAATGGAAATGCTCATTCAGTCCCTTTTCTGGACATAAGCATGGTGCATGTCATACCATTATATGAACAAGACTTGGAGTCTCATAGTTTGAATGTCTCTGCTTCTGTATCTGGCGTTCGTCTTGGTGGAGGAATGAACTATGCTGAAGCCCTCCTGCATAGATTTGGAATACTTGGGCCTGATGGAGCTCCTGGGTTGGGTCTTTGTAAAGGATTGGAAAACTTACAAAAAGGACCATTGTCAAAACTTTTTAGGGCAACTCCTCTCATTGTTGATAATTCAGAAGATGTTGGAAGTATGAGAGAAGGGAAAGAAACCAGTTTTCCCCAACTGAAGAAGCCTGATGATGTGGATGTAACTGTAGAATTGAGAGACTGGTTATTTGCCCTTGAAGATGCACAAGAGACAGCTGAAAGATGGTGGTTCTCCAGCCATGAAGATGAAGACAGAGAAGATAGAAGTTGGCATGCATCTTTCCATGGTTTACGAGTAAATGCAAAAAGTAGCCCAACGAATGTTCCAGATGGAAAAGTACAATTGCAAAGAATAAAACAACATCCAGTAGAACTGATTACGGTTGGAATTCAAGGACTGCAAATCTTGAAGCCTCATATGCAAAAGGACATTCCTTCATCAATAGTAATTGCAAATGGGGGTAAAGAATTCACCGACACAGTTGGAGGAATTGGTCTTGAAGTTCGCTTGATATTAGGTGGGGAGAATGTCGATGATGAAATGGTTAATTGGGAAGTGGAAAACCTAAAATTCTCTGTTAAACAACCGATTGAGGCTGTTGTAACCAAGGATGAGGTTCAGCACCTCACTTTTCTGTGCAAATCTGAAATTGACTCAATTGGCCGGATAACTGCTGGAATTATACGGTTGCTGAAGTTAGAAGGTTCTGTTGGTCAGTCTGTAATAGATCAACTTGGCCACCTAGGAAGTGAAGGCATTGACAAGATTTTCTCTTCTGAAAAGGTTAGTAGAGATGGTAGTGTTGGCAGTAGAGGATTTTCTCCATTGCCAAATGTCATAAACGAGGAATCGCACAGAACTTCGGAACGAACATTAACTTTACTTGAGGAAGCACTTGTGGATTCACAGGCTAAACTTAATGATTTAATCAGTGATATTGGTACTTTGGAGTCTTCCTCTCAACACCTTACCATCGTCCAACTGAGTCAAAAGATAGAGACTATGCGGGACTTATTGATGCAATTACGGAATCAACTTTAA 3648 0.4232 MESILGRALEYTLKYWLKSFSRDQFKLQGRTVHLSNLDIDGDALHSSIGLPPALNVATAKVGKLEITLPSVSNVQTEPIVVHIDRLDLVLEENSDYDSSLSSNSSTPSAASAKGSGYGFADKIADGMTIQIQTVNLLLETRGGSRRQGGATWAPPMASITIRNLLLYTTNENWQVVNLKEVREFSSNKKYIYVFKKLEWQSLSIDLLPHPDMFTEATLGHSQGDSNFRDDDGAKRVFFGGERFIEGISGEAYITIQRTELNSPLGLEVQLHINEAVCPALSEPGLRALLRFMTGVYVCLNRGDVDSKVQQRSTEAAGRSLVSIVVDHIFLCIKDTEFQLELLMQSLFFSRASLSEGDNDNNLTRITIGGLFLRDTFCSPPCILVQPSMQAVSRDAFRVPEFARSFCPPIYPLQEQEWQLIDGTPLICLHALKIMPSPLPPSFASETVIDCQPLMIHLQEESCLRISSLLADGIVVNPGDILPDFSVKSFIFNLKGLDLTVPFDKTKLDISKSDMDNTVQTSFAGARLHIENLFFLNSPSLKLRMLNLEKDPACFSLWEGQPIDASQKKWTARAAHLTLSLEACTDRTGCQNSLGQTAGLWRCVDLKDACIEVAMATADGSPLLQVPPPGGIVRVGVACEHYLSNTSVEQLFFVLDLYGYFGRVSEKIAMAGKRKQLEDITDKSYSGKLMDKVPSDAAVSLSVKNLQLRFLESSSVNVEGMPLVQFVGDELFTSATHRTLGGATIVSSILRWESVEIGCVDAEGHLPCENGSFLSSKENAPLLSDSGYPQLRAVFWVHKNAKHLLNGNAHSVPFLDISMVHVIPLYEQDLESHSLNVSASVSGVRLGGGMNYAEALLHRFGILGPDGAPGLGLCKGLENLQKGPLSKLFRATPLIVDNSEDVGSMREGKETSFPQLKKPDDVDVTVELRDWLFALEDAQETAERWWFSSHEDEDREDRSWHASFHGLRVNAKSSPTNVPDGKVQLQRIKQHPVELITVGIQGLQILKPHMQKDIPSSIVIANGGKEFTDTVGGIGLEVRLILGGENVDDEMVNWEVENLKFSVKQPIEAVVTKDEVQHLTFLCKSEIDSIGRITAGIIRLLKLEGSVGQSVIDQLGHLGSEGIDKIFSSEKVSRDGSVGSRGFSPLPNVINEESHRTSERTLTLLEEALVDSQAKLNDLISDIGTLESSSQHLTIVQLSQKIETMRDLLMQLRNQL 1215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1025 1215 Coils Coil 1194 1214 - -
Ssu8g1025 1215 PANTHER AMINO-TERMINAL REGION OF CHOREIN, A TM VESICLE-MEDIATED SORTER 1 1214 - -
Ssu8g1025 1215 Pfam N-terminal region of Chorein or VPS13 1 98 IPR026854 -
Ssu8g1025 1215 PANTHER UNCHARACTERIZED 1 1214 IPR026728 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1025 Ssu-Chr8 17582938 17592119 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1025 - - gmx:100811661 2240.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1025 8 17582938 17592119 Ssu8g1025 8 17582938 17592119 ECH