Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1024 ATGTTGATGGGACCCCATTTGTGGTGGTTGGAGGAATCAACGAGGTACTCCCAAGTCATTGATGCTGGTAGTGAGAAGATACACAAGAGTTTTGTTGGCCATGGAGACTCCATAAATGAAATCAGGACTCAAACATTAAAGCCATCACTTGTGATATCTACAAGCAAAGTTGATCAAGATGAATCTATTCAGTTATGGAATGTTCATATTGGAATATGCATTTTGATATTTGCTAGAGCTGGAGGACATCATAATGAAGTCTTAAGTCTTGATTTTCATCCATCGGATATTTATCGTATTGTTAGTTGTGGCATGGATAATACTGTAAAAATATGGTCTATGAAGGATAAgatatttaAGTTCTGGACATATGTAGAAAAATCATTCACATGGACAGATCTTCCTTCTAAGTTTCCCACAAAATACGTCCAGTTTCCTGGAACagtttatttttgGTGGCTGGGTGATTTTATCCTCTCAAAGAGTGTTGACAATGAAATTATCTTGTGGGAACCTAAAGTTAAGGAACAAACTCCAGGGGAgGGTGTAGTTGATGTCCTTCAGAAATACCCTATTCCCGAGTGCGATATCTGGTTCATCAAGTTTTCATGTGATTTCCATTTCAACATAGCTGCAGTAGGTAACAGGGAAGGGAAGATTTTTGTTTGGGAATTGCAGTCAAGTCCTCCCATACTTACTGCAAGGTTGTCACATCCTCAATCAAAATCTCCAATCAGGCAGACTGCTACGTCCTTTGATGGAAGGGAACAAAATTTTCTGTTATATCAACGAGGAGCCATGGTGGCTGCCTAG 813 0.3875 MLMGPHLWWLEESTRYSQVIDAGSEKIHKSFVGHGDSINEIRTQTLKPSLVISTSKVDQDESIQLWNVHIGICILIFARAGGHHNEVLSLDFHPSDIYRIVSCGMDNTVKIWSMKDKIFKFWTYVEKSFTWTDLPSKFPTKYVQFPGTVYFWWLGDFILSKSVDNEIILWEPKVKEQTPGEGVVDVLQKYPIPECDIWFIKFSCDFHFNIAAVGNREGKIFVWELQSSPPILTARLSHPQSKSPIRQTATSFDGREQNFLLYQRGAMVAA 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1024 270 Pfam WD domain, G-beta repeat 81 113 IPR001680 GO:0005515
Ssu8g1024 270 PANTHER POLYCOMB GROUP PROTEIN FIE1 14 255 - -
Ssu8g1024 270 PANTHER POLYCOMB PROTEIN 14 255 - -
Ssu8g1024 270 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 80 115 - -
Ssu8g1024 270 SUPERFAMILY WD40 repeat-like 18 255 IPR036322 GO:0005515
Ssu8g1024 270 ProSiteProfiles Trp-Asp (WD) repeats profile. 80 115 IPR001680 GO:0005515
Ssu8g1024 270 Gene3D - 13 262 IPR015943 GO:0005515
Ssu8g1024 270 SMART WD40_4 70 113 IPR001680 GO:0005515
Ssu8g1024 270 SMART WD40_4 183 224 IPR001680 GO:0005515
Ssu8g1024 270 SMART WD40_4 24 67 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1024 Ssu-Chr8 17574907 17582831 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1024 K11462 - gmx:100795288 425.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1024 8 17574907 17582831 Ssu8g1024 8 17574907 17582831 ECH