Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1019 ATGGATTATGAACCTCCATTTTTTGAGATGTACAAGACCCTTCTACAAGGCTCCCTCGGCGTTGATGTTGGTAACAGTGgcataaaaaatgacaaatccGAGTGGTGTGAGCTTCCTCTAATTGATCTGGGCCGGTTAAGTCTTGACCACGTTGAGAGGGATGAGTGCATGAGGGAAATCAGTGGAGCTGCCAGAACGTGGGGTTTTTTCCAGGTTGTGAACCATGGGGTTTCACAAGAGCTGCTGCATAGTCTGCGGCATGAGCAAATGGAAGTGTTCCACATCCCTTTTGCACACAAGTCCCGTGAGAATTTTTTGAACCTACCTTCCAGAAGTTACAGGTGTGGCAACCCATCTGCCACAAACTTGTGGCAAATTTCATGGTCAGAAGCCTTCCACATGTTTCTTCCAGATATTGCTAAGATGGACCAGCACCAAAGTCTGAGATCAACTATTGAAGCTTTTGCATCTGTAGTTGCCCCCCTGGCAGAAAGCTTAGTGCAAATTCTAGCTCAGAAACTGAACATCAAATTCAGCTATTTCCAAGAGAACTGTTCAGCAAACACTAGCTTTCTTCGCCTGAACAGATATCCACCATGCCCATTCTCTTCAAGGGTGTTCGGCCTCTTACCTCATAGTGACTCTAGTTTCCTCACTATAGTGCATCAAGACCAGATTGGGGGTTTGCAATTAATGAAAGATGGAAATTGGATTGGTATCAAACCCAACCCCCAAGCTCTAGTTATTAATATTGGTGATTTATTCCAGGCACTAAGCAACGGCATTTACATAAGTGCCAAACACCGGGTGGTTGCAGCTGAGAAGGTAGAGAGGTTCTCTGTGGCATACTTCTATAACCCCTCCAAAGATGCAGTGATAGAGAGCCACATGAGGCCACCAGTGTACAGGAAGTTTACTTTTGGAGAGTACAGAGAGCAGACAGAGAAAGATGTTAAGGAAACAGGTGATAAAGTGGGGCTCTCTAGGTTTCTCTTGTCAGAAACATAG 1008 0.4444 MDYEPPFFEMYKTLLQGSLGVDVGNSGIKNDKSEWCELPLIDLGRLSLDHVERDECMREISGAARTWGFFQVVNHGVSQELLHSLRHEQMEVFHIPFAHKSRENFLNLPSRSYRCGNPSATNLWQISWSEAFHMFLPDIAKMDQHQSLRSTIEAFASVVAPLAESLVQILAQKLNIKFSYFQENCSANTSFLRLNRYPPCPFSSRVFGLLPHSDSSFLTIVHQDQIGGLQLMKDGNWIGIKPNPQALVINIGDLFQALSNGIYISAKHRVVAAEKVERFSVAYFYNPSKDAVIESHMRPPVYRKFTFGEYREQTEKDVKETGDKVGLSRFLLSET 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1019 335 Pfam 2OG-Fe(II) oxygenase superfamily 190 287 IPR044861 -
Ssu8g1019 335 Gene3D - 36 328 IPR027443 -
Ssu8g1019 335 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 188 287 IPR005123 -
Ssu8g1019 335 PANTHER GIBBERELLIN 2-BETA-DIOXYGENASE 14 325 - -
Ssu8g1019 335 PANTHER 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED 14 325 - -
Ssu8g1019 335 Pfam non-haem dioxygenase in morphine synthesis N-terminal 38 134 IPR026992 -
Ssu8g1019 335 SUPERFAMILY Clavaminate synthase-like 32 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1019 Ssu-Chr8 17511844 17515549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g1019 37 312 Glycosyltransferase AT5G59530 30.034 7.78e-44 152
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1019 - K04125 gmx:100790757 571.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1019 8 17511844 17515549 Ssu8g1019 8 17511844 17515549 ECH