Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1014 ATGTGGAGAGATCCAGGAGTTTCAGCTGATTCTTACTATGAAATCCGCCCCGAGTGCACCGATGTTCCCGTTACTCGATTTAAGATCAAGGCTGGTAAAACACTAAGTGCAAGAAAATGGCATGCCGCATTTACTCCAGAAGGGTATCTAGATATAGGCAAGACTCTAAGCCGAATCTACCGTGGGGGAGTCCATCCATCAATTAAGGGAGAAGTTTGGGAATTTCTACTTGGTTGCTATGATCCCAAGAGTACATTTGAGGAAAGAGATCAGATAAGACAACGCCGAAGAATGCAATATGCTACATGGAAGGAAGAATGCCACCAATTGTTTCCTCTTGTTGGAAGTGGTAGATTTGTTACAGCACCTGTTATTACTGAAGATGGTCAGCCAATTCTAGATCCATTGGTTCTGAAAGAAACAAATCCAGCCAAGGGATTGGCTGTACTTCCTCAGGATAATAATAGTCCTTCAAGAATGGATGCTgcaaataatttagaaaaggtGACAGACAAGATAGTAGTCCAGTGGATGTTAACTCTCCATCAAATAGGTCTTGATGTGGTTCGCACCGATAGGACATTGGTTTTTTATGAGAAGCCAGAAAACTTGTCAAAACTATGGGATGTTCTTGCTGTTTATGCTTGGATAGATAAAGACATTGGCTATGGTCAAGGAATGTGTGACCTATGCTCCCCTATGATAATTCTTCTTGATGATGAGGCAGATGCGTTTTGGTGCTTTGAGCGTTTGATGCGCAGACTTCGAGGCAATTTCAGATGCACCGAGAGCTCTGTTGGAGTGGAGGCTCAACTAATTAATTTGGCTTCAGTTACTCAAGTAATTGATCCAAAACTTCATAAACATTTAGAGCATCTTGGTGGAGGTGACTATCTGTTTGCTTTTCGAATGCTAATGGTTTTGTTTCGTCGAGAATTCTCCTTTTGTGATTCATTGTACCTTTGGGAGaTGATGTGGGCTCTAGAATATGATCCTGacttgttcttgatatatgaaGAGTCTCAATCAGCTTCTGAAAAAGCTAAGGGCTCTAAAGGAAAAACAAAGTCAATACGTCAATGTGGAAAgtatgagagagaaaatttgaaaagtggAGCAAAGAATGCTGAAGCTCCTCTTCCTATATCTGTTTTTCTTGTTGCTAGTGTATTGAAAGATAAAAGCACAAAACTACTCCAAGAAGCACGGGGCTTGGATGATGTTGTCAAGATTTTGAATGACATAACTGGAAATCTAGATGCCAAAAAAGCTTGCAGTGTGGCTATGAAACTTCACAAGAAATATTTGAGAAAGGCCAAGAAACCCTAG 1329 0.3913 MWRDPGVSADSYYEIRPECTDVPVTRFKIKAGKTLSARKWHAAFTPEGYLDIGKTLSRIYRGGVHPSIKGEVWEFLLGCYDPKSTFEERDQIRQRRRMQYATWKEECHQLFPLVGSGRFVTAPVITEDGQPILDPLVLKETNPAKGLAVLPQDNNSPSRMDAANNLEKVTDKIVVQWMLTLHQIGLDVVRTDRTLVFYEKPENLSKLWDVLAVYAWIDKDIGYGQGMCDLCSPMIILLDDEADAFWCFERLMRRLRGNFRCTESSVGVEAQLINLASVTQVIDPKLHKHLEHLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFLIYEESQSASEKAKGSKGKTKSIRQCGKYERENLKSGAKNAEAPLPISVFLVASVLKDKSTKLLQEARGLDDVVKILNDITGNLDAKKACSVAMKLHKKYLRKAKKP 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1014 442 PANTHER RAB-GTPASE-TBC DOMAIN-CONTAINING PROTEIN-RELATED 1 442 - -
Ssu8g1014 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 39 289 IPR035969 -
Ssu8g1014 442 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 160 259 - -
Ssu8g1014 442 ProSiteProfiles TBC/rab GAP domain profile. 63 329 IPR000195 -
Ssu8g1014 442 Gene3D - 265 441 - -
Ssu8g1014 442 SMART tbc_4 60 352 IPR000195 -
Ssu8g1014 442 Pfam Rab-GTPase-TBC domain 170 327 IPR000195 -
Ssu8g1014 442 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 442 - -
Ssu8g1014 442 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 267 435 IPR035969 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1014 Ssu-Chr8 17293871 17301372 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1014 - - gmx:100805808 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1014 8 17293871 17301372 Ssu8g1014 8 17293871 17301372 ECH