Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g1012 ATGATTTCCTCAAGCAAAATCAAATCCGTCGATTTTTACAGAAAAATCCCAAGAGATTTAACTGAGGCATCATTATCTGGAGCAGGGTTATCCATAATAGCAGCTCTCTGCATGGTGTTTTTATTTGGAATGGAACTTAATAGTTATTTGTCTGTCAGCACCTCTACATCTGTGATTGTTGACAAGAGTTCTGATGGGGACTATTTACGTATAGATTTCAATATCAGTTTTCCTGCCCTCTCCTGTGAGTTTGCATTAGTTGATGTGAGTGACGTGCTCGGAACAAACAGGCTGAATCTAACAAAAACAGTTCGCAAGTTTtctattgattcaaatttaagacCCACTGGTGCTGAATTCCATTCAGGACCAGATGCTAATGTCATTAAGCATGATAATGAAGTAAATGAAGAATTCATTGAAGGTGCTGTTGTACTCACAACACAGAATTTCGATAAATATGCTCTTCAGTTTCCAATTAcagttgttaatttttatgCTCCTTGGTGTTACTGGAGTCAACGCTtgAAACCTTCATGGGAGAAGGcagctaaaataattaaagacagATATGATCCAGAAATGGATGGCCGTATTATTTTGGGGAAGGTAGATTGTACTCAAGAAGGAGACTTGTGCCGGAGGCATCATATACAAGGGTATCCTTCAATTCGTATCTTTCGTAAAGGAAGTGATGTTAGaagtgaccatggacATCATGATCATGAGTCCTATTATGGAGATCGTGACACAGATAGCCTAGTCAAGACAATGGAGAATTTAGTGACATCTCTCCCTACAGAATCTCAGAAGTTAGCTTTGGAGGATAAATTCAATGTTGCGACAAATACAAAAAGACCAGCACCATCAGCAGGGGGATGTAGAATTGAAGGATATGTGCGTGTCAAGAAGGTTCCTGGAAACTTGATCGTCTCAGCTAGATCTGATGCCCATTCCTTTGATGCTTCTCAAATGAACATGTCACATGTCATAAACCATTTATCTTTTGGAAGGAAAGTATCACCTAGGGTCATGAGTGATGTGAAGCGCTTGATACCTTACGTTGGTAGCAGCCATGACAGGCTGAATGGTCGGTCATTTATCAATACACGTGATTTAGGAGCAAATGTTACTATGGAGCATTACCTTCAGATAGTTAAAACAGAGGTGATAACTagaaaagattataaattagTTGAGGAGTATGAGTACACAGCTCACAGCAGTGTGGCACAGAGTTTACACATTCCAGTTGCTAAGTTCCATCTTGAGCTTTCCCCCATGCAGGTCTTAATAACGGAAAACCAGAAGTCCTTTTCTCACTTTATTACAAATGTCTGTGCTATTATTGGGGGTGTTTTCACGGTTTGTATCTCATATTGGCGTTCCGTACTTGTACTGTCCTCTATTTGTATGGTTAACGACACTTCTCTCTGGTTTCAGGTTGCAGGAATTATGGACTCGATTTTGCACAACACTATTAGACTAATGAAAAAAGTAGAGCTTGGCAAAAATTTTTGA 1521 0.3754 MISSSKIKSVDFYRKIPRDLTEASLSGAGLSIIAALCMVFLFGMELNSYLSVSTSTSVIVDKSSDGDYLRIDFNISFPALSCEFALVDVSDVLGTNRLNLTKTVRKFSIDSNLRPTGAEFHSGPDANVIKHDNEVNEEFIEGAVVLTTQNFDKYALQFPITVVNFYAPWCYWSQRLKPSWEKAAKIIKDRYDPEMDGRIILGKVDCTQEGDLCRRHHIQGYPSIRIFRKGSDVRSDHGHHDHESYYGDRDTDSLVKTMENLVTSLPTESQKLALEDKFNVATNTKRPAPSAGGCRIEGYVRVKKVPGNLIVSARSDAHSFDASQMNMSHVINHLSFGRKVSPRVMSDVKRLIPYVGSSHDRLNGRSFINTRDLGANVTMEHYLQIVKTEVITRKDYKLVEEYEYTAHSSVAQSLHIPVAKFHLELSPMQVLITENQKSFSHFITNVCAIIGGVFTVCISYWRSVLVLSSICMVNDTSLWFQVAGIMDSILHNTIRLMKKVELGKNF 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g1012 506 Gene3D Glutaredoxin 137 287 - -
Ssu8g1012 506 ProSiteProfiles Thioredoxin domain profile. 117 263 IPR013766 -
Ssu8g1012 506 Pfam Thioredoxin 144 242 IPR013766 -
Ssu8g1012 506 SUPERFAMILY Thioredoxin-like 143 261 IPR036249 -
Ssu8g1012 506 Pfam Endoplasmic reticulum vesicle transporter 289 457 IPR012936 -
Ssu8g1012 506 Pfam Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC) 7 97 IPR039542 -
Ssu8g1012 506 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 479 506 - -
Ssu8g1012 506 PANTHER PROTEIN DISULFIDE-ISOMERASE 5-3 1 457 - -
Ssu8g1012 506 CDD PDI_a_family 144 258 - -
Ssu8g1012 506 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 479 506 IPR045888 -
Ssu8g1012 506 PANTHER ENDOPLASMIC RETICULUM-GOLGI INTERMEDIATE COMPARTMENT PROTEIN 1 457 IPR045888 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g1012 Ssu-Chr8 17272190 17283119 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g1012 - - gmx:100806869 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g1012 8 17272190 17283119 Ssu8g1012 8 17272190 17283119 ECH