Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0987 ATGTCTCAGTTATTGTCTCCATTGTGTATGGAGGCTCTGAAAATCCACAACCCATCATTGAACTTGTGTTCAAGAAGCTCACGGCGGATGCTGGTGAAGGCTGCAAGTCCTTGCACCTTTGTGACACACAGTGGTAAGAGAAGAGGGTGTGGCAGAGTAAGAGTTACTGCTGAAGACTCAGTTTCTCCCATTGAGACTGTTGCAGATGACTATTATGCAGTTCTGGGACTGCTTCCAGATGCCACACCAGAGGAGGTCAAGAAGGCATACTATAATTGCATGAAATCTTGCCACCCGGACTTGAGTGGCAATGATCCTGAGACCACAAATTTCTGCATGTTCATCAATGAAGTCTACACGGTGCTGAGTGATCCCATCCAGCGCAGGATTTATGATGAAATTCATGGCTATTCTTTAACTTCAATCAATCCTTTCCTTGATGATTCAACCCCAAAGGATCATGCCTTTGTAGATGAATTCAGCTGCATAGGATGCAAAAATTGTGCAAATGTAGCCCCTGATGTTTTTGCAATTGAGGAAGACTTTGGAAGAGCCAGAGTATACAACCAATGCGGGAACCCTGAATTAGTTCAACAGGCAATTGACAGTTGccCTGTTAGCTGCATTCATTGGACATCTGCTGCACAACTATCATTACTTGAAGATGAGATGCGCCGTGTAGAAAGAGTCAATGTTGCCCTAATGCTATCAGGAATGGGAACAGCATCAATTGATGTTTTCAGAATGGCAAGTTCCAGATGGGAAAAGAGGCAATCAAAAGTCTTGGAAAAAGCAAAGTTGAGAATGATGAAGCAAGAAGGTTCTGATAAGAAAAAATCATACTGGGACAATCTTTGGGGCAAACAGAAAGACTATCAAAGTTCAGATGAGGAAGTTGAAGCAAGAGCAAAAAGAGCTGCTTCAGCAGCACAAAGATGGACGGAATACTCAAGGAGGGGTATTGATAAGCCTCCCACATTTAAACTTCCAGAGGCAAGTCGTGGCAAGGACAAGTGA 1017 0.4336 MSQLLSPLCMEALKIHNPSLNLCSRSSRRMLVKAASPCTFVTHSGKRRGCGRVRVTAEDSVSPIETVADDYYAVLGLLPDATPEEVKKAYYNCMKSCHPDLSGNDPETTNFCMFINEVYTVLSDPIQRRIYDEIHGYSLTSINPFLDDSTPKDHAFVDEFSCIGCKNCANVAPDVFAIEEDFGRARVYNQCGNPELVQQAIDSCPVSCIHWTSAAQLSLLEDEMRRVERVNVALMLSGMGTASIDVFRMASSRWEKRQSKVLEKAKLRMMKQEGSDKKKSYWDNLWGKQKDYQSSDEEVEARAKRAASAAQRWTEYSRRGIDKPPTFKLPEASRGKDK 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0987 338 MobiDBLite consensus disorder prediction 308 338 - -
Ssu8g0987 338 CDD DnaJ 70 124 IPR001623 -
Ssu8g0987 338 PRINTS 3Fe-4S ferredoxin signature 157 168 IPR001080 GO:0005506|GO:0009055
Ssu8g0987 338 PRINTS 3Fe-4S ferredoxin signature 197 209 IPR001080 GO:0005506|GO:0009055
Ssu8g0987 338 PRINTS 3Fe-4S ferredoxin signature 168 178 IPR001080 GO:0005506|GO:0009055
Ssu8g0987 338 MobiDBLite consensus disorder prediction 316 338 - -
Ssu8g0987 338 PRINTS DnaJ domain signature 107 127 IPR001623 -
Ssu8g0987 338 PRINTS DnaJ domain signature 72 90 IPR001623 -
Ssu8g0987 338 PRINTS DnaJ domain signature 90 105 IPR001623 -
Ssu8g0987 338 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 153 181 IPR017896 -
Ssu8g0987 338 Pfam DnaJ domain 70 132 IPR001623 -
Ssu8g0987 338 SMART dnaj_3 69 127 IPR001623 -
Ssu8g0987 338 Pfam 4Fe-4S single cluster domain of Ferredoxin I 157 211 - -
Ssu8g0987 338 PANTHER DNAJ HEAT SHOCK AMINO-TERMINAL DOMAIN PROTEIN 1 338 - -
Ssu8g0987 338 SUPERFAMILY Chaperone J-domain 69 134 IPR036869 -
Ssu8g0987 338 PANTHER OS01G0730500 PROTEIN 1 338 - -
Ssu8g0987 338 SUPERFAMILY 4Fe-4S ferredoxins 155 211 - -
Ssu8g0987 338 ProSiteProfiles dnaJ domain profile. 70 135 IPR001623 -
Ssu8g0987 338 Gene3D DnaJ domain 55 144 IPR036869 -
Ssu8g0987 338 Gene3D - 154 213 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0987 Ssu-Chr8 16767012 16771401 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0987 - - gmx:100786494 633.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0987 8 16767012 16771401 Ssu8g0987 8 16767012 16771401 ECH