Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0948 ATGGGTGCTGCCGACGAAGAATACGACTACTTGTTCAAGCTGGTGCTGATCGGGGACTCGGGTGTTGGCAAGTCCAACCTCTTGTCCCGATTCACCCGAAACGAGTTCAGCCTGGAAACCAAATCCACCATCGGCGTCGAATTCGCCACCCGCAGCGTCCCCATCGATAACAAGCTTGTCAAGGCACAAATCTGGGACACCGCAGGCCAAGAAAGATATCGTGCAATTACAAGTGCATACTACCGAGGAGCCGTTGGTGCTTTGGTTGTGTACGATGTGACCAGACACGTGACATTTGAGAACGTGGAGAGATGGTTGAAGGAGCTTCGGGATCACACTGACGCGTACGCTGTGGTCATGCTGGTGGGAAACAAGGCAGACCTTCGACATCTGCGCGCGGTGTCGACGGAAGAAGCCGCGGCATTTGCGGAGAAAGAGAAGACATATTTCATGGAAACCTCTGCCCTCGAGTCCTTGAACGTGGACAACGCTTTCGTGGAAGTGTTGACTCAGATATACAATGTGGTGAGTAGGAAGAATCTTGAGACGGTGGATGATGACCCTCCCGCAGCAGCCTTGCCCAAAGGGCAAACCAtcgttgttggaaccaaagatgatGTCTCGGCGGTTAAAAAGAGTGGATGCTGCTCCACATAG 657 0.5129 MGAADEEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSLETKSTIGVEFATRSVPIDNKLVKAQIWDTAGQERYRAITSAYYRGAVGALVVYDVTRHVTFENVERWLKELRDHTDAYAVVMLVGNKADLRHLRAVSTEEAAAFAEKEKTYFMETSALESLNVDNAFVEVLTQIYNVVSRKNLETVDDDPPAAALPKGQTIVVGTKDDVSAVKKSGCCST 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0948 218 SMART rho_sub_3 14 175 IPR001806 GO:0003924|GO:0005525
Ssu8g0948 218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 6 183 IPR027417 -
Ssu8g0948 218 TIGRFAM small_GTP: small GTP-binding protein domain 10 168 IPR005225 GO:0005525
Ssu8g0948 218 ProSiteProfiles small GTPase Rho family profile. 5 173 - -
Ssu8g0948 218 PRINTS Transforming protein P21 ras signature 53 75 - -
Ssu8g0948 218 PRINTS Transforming protein P21 ras signature 35 51 - -
Ssu8g0948 218 PRINTS Transforming protein P21 ras signature 115 128 - -
Ssu8g0948 218 PRINTS Transforming protein P21 ras signature 150 172 - -
Ssu8g0948 218 PRINTS Transforming protein P21 ras signature 12 33 - -
Ssu8g0948 218 SMART rab_sub_5 12 175 - -
Ssu8g0948 218 ProSiteProfiles small GTPase Rab1 family profile. 7 216 - -
Ssu8g0948 218 CDD Rab11_like 9 173 - -
Ssu8g0948 218 PANTHER DRAB11-RELATED 4 218 - -
Ssu8g0948 218 ProSiteProfiles small GTPase Ras family profile. 6 218 IPR001806 GO:0003924|GO:0005525
Ssu8g0948 218 SMART ran_sub_2 17 217 - -
Ssu8g0948 218 SMART ras_sub_4 9 175 - -
Ssu8g0948 218 PANTHER SMALL GTPASE SUPERFAMILY, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 4 218 - -
Ssu8g0948 218 Pfam Ras family 13 173 IPR001806 GO:0003924|GO:0005525
Ssu8g0948 218 Gene3D - 4 216 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0948 Ssu-Chr8 16116158 16118132 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0948 K07904 - gmx:100305599 389.037
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0948 8 16116158 16118132 Ssu8g0948 8 16116158 16118132 ECH
Ssu8g0948 8 16116158 16118132 Ssu1g0509 1 11406035 11408633 ECH