Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0792 ATGGCGACTCTGGATTCCGACGTGACGATGGTGCCGGCCGGCGAGCCCTCCAGCAGCGCCGGTCCTTCTTCTTCCAACAAGAAGCCCAAGCGGTTCGAGATCAAGAAGTGGAATGCCGTTTCTCTCTGGGCTTGGGATATTGTTGTCGATAATTGCGCTATCTGCCGGAACCATATCATGGATCTCTGTATTGAGTGCCAGGCCAATCAGGCTAGTGCCACTAGCGAGGAGTGCACTGTAGCTTGGGGAGTCTGTAACCATGCTTTTCATTTCCATTGCATAAGCCGATGGCTCAAGACCCGTCAAGTATGTCCTTTAGATAATAGCGAGTGGGAGTTTCAGAAATACGGTCACTAG 357 0.5182 MATLDSDVTMVPAGEPSSSAGPSSSNKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0792 118 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 118 - -
Ssu8g0792 118 CDD mRING-H2-C3H2C2D_RBX1 50 111 - -
Ssu8g0792 118 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 19 118 IPR013083 -
Ssu8g0792 118 SUPERFAMILY RING/U-box 30 115 - -
Ssu8g0792 118 Pfam RING-H2 zinc finger domain 50 108 IPR024766 GO:0008270
Ssu8g0792 118 ProSiteProfiles Zinc finger RING-type profile. 63 108 IPR001841 -
Ssu8g0792 118 PANTHER RING BOX 1 118 - -
Ssu8g0792 118 MobiDBLite consensus disorder prediction 12 26 - -
Ssu8g0792 118 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0792 Ssu-Chr8 13059273 13062238 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0792 K03868 - gmx:100526919 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0792 8 13059273 13062238 Ssu3g2241 3 72267179 72269807 PCT