Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0608 ATGGCCAAGCTCAGTGTCAGAAGCAGCAGCAGCAAAAAGAAAAGCGTAGGTGGCATTGTGAAGTTCAAGTTTGTCGTTGAAAAGCTCCAAAAGAGACTCCTACAGGGGAGAAACAAAGAAGGGTGTCCAGAGGACGTGAAGGAAGGACACTTCGCTGTGATTGCGGAGGGTGGAGAGGAACAAAAGAGGTTCGTGCTGCCACTAAGCTGTTTAAACAACCCAACGTTTTTGAAGCTATTGGAGCAAGCAGAAGAAGAGTACGGGTTTGATCATGAAGGTGCACTAACCATTCCTTGCAGGCCTAGTGAGCTCGAGAGGATACTCGCGCAGCAATGGCATCAAGAGGGAACAACTGAAACTACTGGACTAAGGTGGACTTGTAAAAAATCCATGgtattttga 402 0.4652 MAKLSVRSSSSKKKSVGGIVKFKFVVEKLQKRLLQGRNKEGCPEDVKEGHFAVIAEGGEEQKRFVLPLSCLNNPTFLKLLEQAEEEYGFDHEGALTIPCRPSELERILAQQWHQEGTTETTGLRWTCKKSMVF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0608 133 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 26 117 IPR003676 GO:0009733
Ssu8g0608 133 PANTHER AUXIN-RESPONSIVE PROTEIN SAUR32-LIKE 26 117 - -
Ssu8g0608 133 Pfam Auxin responsive protein 31 109 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0608 Ssu-Chr8 9868676 9869077 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu8g0608 12 109 Calmodulin-binding Proteins AT4G34750 38.776 2.29e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0608 - K14488 gmx:102668167 205.682
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0608 8 9868676 9869077 Ssu8g0608 8 9868676 9869077 ECH
Ssu8g0608 8 9868676 9869077 Ssu3g2460 3 76372367 76372759 PCT