Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0370 ATGGCGTTGAACAATGGCGTCCCGGCCACCGGCACCGGCCTCATCGTGAGCTTCGGCGAGATGCTCATCGACTTCGTCCCCACCGTCTCCGGCGTGTCCCTGGCGGAGGCGCCGGGCTTCCTCAAGGCCCCCGGCGGAGCCCCCGCCAACGTCGCCATCGCCGTCTCCAGACTCGGCGGCAAGGCGGCCTTCGTCGGCAAGCTCGGCGACGACGAGTTCGGCCACATGCTCGCCGGAATCCTCAAGGAGAACGGCGTCCGCGCCGACGGCATCACCTTCGACCAGGGCGCGCGCACCGCGCTCGCCTTCGTCACCCTACGCGCCGACGGGGAGCGTGAGTTCATGTTCTACCGAAACCCCAGCGCCGACATGCTCCTCCGACCCGAAGAGCTCAACCTCGAACTCATCAGATCTGCAAAAGTTTTCCATTACGGATCGATAAGCTTGATCGTGGAGCCATGCAGATCGGCACACCTGAAGGCAATGGAAGTTGCCAAAGAGGCTGGCTGCCTGCTCTCCTATGACCCCAACCTTCGCCTACCGTTGTGGCCTTCGGCCGAGGAAGCTCGTAAGCAAATACTGAGCATATGGGAGAAGGCTGATTTGATCAAGGTCAGTGATGTGGAGCTTGAGTTCCTCACTGGAAGTGACAAGATTGATGACGCTTCTGCTTTGTCATTGTGGCACCCCAACTTGAAGTTACTCCTTGTCACTCTAGGGGAACATGGTTCCAGATACTACACCAAGAATTTCCATGGATCAGTAGATGCTTTTCATGTCAACACAGTTGATACAACTGGTGCCGGTGATTCCTTTGTTGGTGCACTTTTGTCCAATATTGTCGATGATCAGTCCATACTTGAAGATGAACCAAGGTTAAGAGAAGTACTCAAGTTTGCAAATGCATGTGGAGCAATTACAACAACTAAAAAGGGAGCAATTCCAGCCCTTCCCAAAGAGGAGGATGCGCTGAAACTGATCAAAGGGGCATAG 993 0.5559 MALNNGVPATGTGLIVSFGEMLIDFVPTVSGVSLAEAPGFLKAPGGAPANVAIAVSRLGGKAAFVGKLGDDEFGHMLAGILKENGVRADGITFDQGARTALAFVTLRADGEREFMFYRNPSADMLLRPEELNLELIRSAKVFHYGSISLIVEPCRSAHLKAMEVAKEAGCLLSYDPNLRLPLWPSAEEARKQILSIWEKADLIKVSDVELEFLTGSDKIDDASALSLWHPNLKLLLVTLGEHGSRYYTKNFHGSVDAFHVNTVDTTGAGDSFVGALLSNIVDDQSILEDEPRLREVLKFANACGAITTTKKGAIPALPKEEDALKLIKGA 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0370 330 ProSitePatterns pfkB family of carbohydrate kinases signature 1. 45 69 IPR002173 GO:0016773
Ssu8g0370 330 Pfam pfkB family carbohydrate kinase 14 319 IPR011611 -
Ssu8g0370 330 SUPERFAMILY Ribokinase-like 15 326 IPR029056 -
Ssu8g0370 330 Gene3D - 13 330 IPR029056 -
Ssu8g0370 330 PANTHER HEXOKINASE FAMILY MEMBER 20 319 - -
Ssu8g0370 330 PANTHER BNAA04G18320D PROTEIN 20 319 - -
Ssu8g0370 330 CDD bac_FRK 14 314 - -
Ssu8g0370 330 ProSitePatterns pfkB family of carbohydrate kinases signature 2. 264 277 IPR002173 GO:0016773
Ssu8g0370 330 PRINTS Ribokinase signature 235 246 IPR002139 GO:0016301
Ssu8g0370 330 PRINTS Ribokinase signature 40 59 IPR002139 GO:0016301
Ssu8g0370 330 PRINTS Ribokinase signature 195 210 IPR002139 GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0370 Ssu-Chr8 5897982 5901946 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0370 K00847 - gmx:100803713 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0370 8 5897982 5901946 Ssu3g2744 3 81716082 81720053 PCT