Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0172 ATGGGTGCTTCTCTTCCCCCCAAAGAGGCCAACCTCTTCAAGCTTATTGTTAAATCCTATGAAACCAAACAATACAAAAAGGGCCTCAAAGCAGCCGATgccattttgaaaaaattcccAGACCATGGAGAAACTTTATCAATGAAGGGTTTGACATTAAATTGTACGGATCGTAAGTCTGAGGCATACGAACTGGTTCGCCAAGGATTGAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTATGGTCTCCTATATCGGTCAGACAGAGAATATAGGGAAGCAATAAAGTGCTATCGAAATGCACTGAAAATAGATCCTGACAATATTGAAATCTTGCGGGACCTATCACTTTTACAGGCTCAAATGCGAGATTTAACTGGCTTTGTTGAGACACGACAACAACTTCTGACGCTCAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTGAACTCTAATGCATCAAAGGCTATTGAAATTCTTGAAGCGTATGAAGGGACATTGGAAGATGATTATCCTCCGGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTGTATAAGATCTCCTTGTTAGAAGAATGTGGATTTTTTGAGAAAGCACTTGAGGAGTTGCGAAAGAAAGAGTTAAAAATTGTTGATAAGCTTGCATATAAAGAAGAGGAGGTTTCACTTTTAGTCAAGCTTGGCTGCTTAGAAGAAGGGGAGAAATTGTACCGGGCATTACTTTCCCTGAATCCTGACAATTATAGATATTATGAAGGCATCCAAAAATGTGTTGGATTATATTCGGAAAATGGTCATTTTTCTCCTGATGAAATAGATCGGTTAGATGCCTTGTACAAAACACTTGGACAGCAATATAAGTGGTCTTCTGCTGTTAAGagAATACCACTGGATTTTTTACAAGGTGACAAATTTCGAGAAGCAGCAGATAGTTATATTAGGCCTCTCCTAACTAAGGGGGTTCCATCTCTATTCTCTGATCTTTCTTCGTTATACAATCAACCTGGGAAGGCAGACATTTTGGAACAGACCATTCTTGAGTTAGAGAGTTCAATTAGGACCACTGGTCAATATACTGGAAGGATGGAAAAAGAGCCACCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAgCATTATGACAGACGTGGCCAATATGAAATTGCTCTTTCTAAAATCGATGAGGCTATTGATCACACACCTACTGTCATTGATCTGTATTCAGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCGGCTGCTGCTGCATTTGCTGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGCGTTAAGCGCATGCTGCAGGCTGATAAGGTGGCTTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAGGATGGTGATCAACACAACAACCTACATGACATGCAGTGCATGTGGTACGAGCTTGCCTCTGCTGAAAGCTATTTCCGCCAAGGTGATCTTGGACTGGCTCTCAAGAAATTTCTAGGTGTGGAGAAGCATTATGCAGATATTACAGAAgatcaatttgattttcattcataTTGCTTAAGGAAAATGACATTGCGTACATATGTGGAAATGCTTAAATTTCAAGACCAATTGCATTCACATGCGTACTTTCATAAAGCAGCTGCTGGAGCTATCAGatgttatataaaattgcaTGATTCTCCTCCAAAGTCGACAGCTGAGGAAGATAATGATATGTCTAAGTTGCTTCCTtctcagaaaaagaaaatgaggcaAAAACAGAGAAAGGCAGAAGCAAGAGCCAAAAAAgaggcagaagaaaaaaatgaagaatcaaGTGCTGGTGGGATGGCAAAGTCTGGAAAACGGCATACAAAACCTGTTGATCCAGATCCACGTGGTGAAAAGTTGTTGCAGGTTGAATATCCATTGTTGGAAGCCACAAAATACTTGAAGCTGCTGCAGAAGAATTCACCTGATTCATTGGAGACACACTTTCTctcttttgaattatatatgagAAAACAGAAGATTTTGCTTGCCTTCCAGGCTGTGAAGCAGTTACTGAGGTTGGATGCTGAACACCCTGATTCTCATCGTTGCTTGATTAAATTCTTCAATAAAGTGGGATCCATGAATGCTCCTGTGACTGACAGTGAGAAACTCATTTGGAGTGTCTTAGAAGCTGAGCGCCAAACTATCAGTCAGCTGCATGGAAAATCTCTGTTTGAGACAAATAACTCTTTCCTTGAAAAACATGAAGATTCTTTGATGCATAGAGCTGCTTTTGGAGAAATGTTGTGTATTTTGGATCCCAGCAGAAGGTCCGAGGTTGTCAATTTGATTGAAGGGTCAACAAATAACCTTGTGCCAAGAAATGGAGCGCTTGGACCAATCGGGGAATGGAAACTTAAAGATTGTATTGCAGTTCATAAACTTCTTGGAACAGTTCTTGTTGATCAGGATGCTGCATTAAGATGGAAAGTGCGTTGTGCTGAGTTTTTCCCGTACTCCACGTACTTTGATGGCAGTCGCAGCTCTGTATCTCCCAACTCTGCCCTTAATAAGATATGCAATAGCACTGAAAATGGGACCTCCAACCATTCGGTGGGCAATCACAATTCAGAACCCGTCACATCAAATGGGAAACTAGAGGCATTTAAAGATCTCACTGTCTGA 2706 0.3925 MGASLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPDHGETLSMKGLTLNCTDRKSEAYELVRQGLKNDLKSHVCWHVYGLLYRSDREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAIEILEAYEGTLEDDYPPENERCEHGEMLLYKISLLEECGFFEKALEELRKKELKIVDKLAYKEEEVSLLVKLGCLEEGEKLYRALLSLNPDNYRYYEGIQKCVGLYSENGHFSPDEIDRLDALYKTLGQQYKWSSAVKRIPLDFLQGDKFREAADSYIRPLLTKGVPSLFSDLSSLYNQPGKADILEQTILELESSIRTTGQYTGRMEKEPPSTLMWTLFLLAQHYDRRGQYEIALSKIDEAIDHTPTVIDLYSVKSRILKHAGDLAAAAAFADEARCMDLADRYVNSECVKRMLQADKVALAEKTAVLFTKDGDQHNNLHDMQCMWYELASAESYFRQGDLGLALKKFLGVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDQLHSHAYFHKAAAGAIRCYIKLHDSPPKSTAEEDNDMSKLLPSQKKKMRQKQRKAEARAKKEAEEKNEESSAGGMAKSGKRHTKPVDPDPRGEKLLQVEYPLLEATKYLKLLQKNSPDSLETHFLSFELYMRKQKILLAFQAVKQLLRLDAEHPDSHRCLIKFFNKVGSMNAPVTDSEKLIWSVLEAERQTISQLHGKSLFETNNSFLEKHEDSLMHRAAFGEMLCILDPSRRSEVVNLIEGSTNNLVPRNGALGPIGEWKLKDCIAVHKLLGTVLVDQDAALRWKVRCAEFFPYSTYFDGSRSSVSPNSALNKICNSTENGTSNHSVGNHNSEPVTSNGKLEAFKDLTV 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0172 901 SMART tpr_5 43 76 IPR019734 GO:0005515
Ssu8g0172 901 SMART tpr_5 77 110 IPR019734 GO:0005515
Ssu8g0172 901 SMART tpr_5 380 413 IPR019734 GO:0005515
Ssu8g0172 901 PANTHER BNAC02G23120D PROTEIN 10 883 - -
Ssu8g0172 901 MobiDBLite consensus disorder prediction 868 889 - -
Ssu8g0172 901 MobiDBLite consensus disorder prediction 577 594 - -
Ssu8g0172 901 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 696 IPR021183 -
Ssu8g0172 901 Gene3D - 505 725 - -
Ssu8g0172 901 SUPERFAMILY TPR-like 13 124 IPR011990 GO:0005515
Ssu8g0172 901 SUPERFAMILY TPR-like 381 707 IPR011990 GO:0005515
Ssu8g0172 901 MobiDBLite consensus disorder prediction 577 643 - -
Ssu8g0172 901 Gene3D - 2 503 - -
Ssu8g0172 901 SUPERFAMILY TPR-like 191 427 IPR011990 GO:0005515
Ssu8g0172 901 PIRSF NAT_A 1 818 IPR021183 -
Ssu8g0172 901 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 883 - -
Ssu8g0172 901 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Ssu8g0172 901 Coils Coil 596 620 - -
Ssu8g0172 901 MobiDBLite consensus disorder prediction 606 622 - -
Ssu8g0172 901 Pfam TPR repeat 84 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0172 Ssu-Chr8 2616447 2636951 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0172 K20792 - gmx:100776968 1619.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0172 8 2616447 2636951 Ssu8g0172 8 2616447 2636951 ECH
Ssu8g0172 8 2616447 2636951 Ssu4g3386 4 84340559 84376187 PCT