Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu8g0102 ATGGGTGACTGGTCTGGGTTTATGGACAAAATTCATGAAGTTGTTCCTATGGATCAACAACCTGAACTGCTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGGATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTGTTTTCTATGCTTCCCGGATTTAGTGCCGAATTAATGCCAAAAGGCCGTGAGAAAGCCAAGCAAAAATTAAGCGTTACATAA 240 0.4083 MGDWSGFMDKIHEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKAKQKLSVT 79
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu8g0102 79 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 74 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Ssu8g0102 79 SUPERFAMILY Signal peptide-binding domain 2 68 IPR036891 GO:0006614|GO:0008312|GO:0048500
Ssu8g0102 79 Pfam Signal peptide binding domain 31 75 IPR004125 GO:0006614|GO:0008312|GO:0048500
Ssu8g0102 79 Gene3D - 14 78 IPR036891 GO:0006614|GO:0008312|GO:0048500
Ssu8g0102 79 PANTHER SIGNAL RECOGNITION PARTICLE 54 KDA PROTEIN 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu8g0102 Ssu-Chr8 1717748 1718163 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu8g0102 K03106 - zju:107407682 149.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu8g0102 8 1717748 1718163 Ssu8g0102 8 1717748 1718163 ECH
Ssu8g0102 8 1717748 1718163 Ssu4g3450 4 85142654 85145404 PCT