Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2421 ATGGAAACCTTCCTCTTCACCTCAGAATCTGTAAACGAAGGCCACCCTGACAAGATCTGTGACCAGGTTTCTGATGCCATCCTCGATGCTTGCTTGGAGCAAGACCCAGAGAGCAAGGTTGCGTGCGAAACGTGTACAAAAACCAACATGGTTATGGTCTTTGGTGAGATCACAACCAAGGCAAAGGTGAACTATGAGAAAATAGTTCGCGACACTTGCCGAGGCATTGGGTTCGTGTCAGCTGAAGTTGGTCTTGATGCTGACAAATGCAATGTTCTTGTCAACATCGAGCAACAGAGCCCTGATATTGCCCAGGGGGTTCACGGTCACTTGACCAAAAAACCTGAGGAAATTGGAGCCGGTGACCAAGGCCACATGTTTGGATATGCCACAGACGAAACACCTGAACTAATGCCACTCACTCATGTGCTTGCTACCAAACTTGGTGCCAAGCTCACTGAAGTAAGAAAGAATAAGACCTGCCCGTGGCTGAGGCCGGATGGTAAAACCCAAGTGACTGTCGAGTACAGGAATGATAATGGGGCCATGGTCCCTATCCGCGTGCACACTGTCCTCATCTCAACCCAACACGATGAAACTGTCACCAACGACCAGATTGCCAAGGATTTGAAAGAGCATGTGATAAAACCTGTGATCCCAGCTGAATACCTTGATGACAAGACCATCTTCCACCTCAACCCTTCAGGTCGGTTTGTGATTGGTGGACCCCATGGAGATGCAGGACTCACTGGAAGGAAGATCATCATCGATACCTATGGTGGGTGGGGTGCTCATGGTGGAGGTGCCTTCTCGGGCAAGGATCCAACCAAGGTGGATAGGAGTGGTGCATACATTGTTAGGCAAGCAGCAAAGAGTGTGGTGGCTTCAGGGCTTGCACGTCGTTGTATTGTGCAGGTCTCATATGCAATTGGAGTGCCAGAGCCACTGTCTGTGTTTGTGGATACCTACAAAACGGGAAAGATTCCGGACAAGGATATTCTGGCTTTGATTAAGGAGAATTTTGACTTCAGGCCCGGAATGATTGCCATCAATCTTGACCTCATGAGAGGAGGCAACTTCAGGTACCAGAAGACTGCTGCTTATGGGCATTTTGGACGAGACGATCCTGATTTCACATGGGAGACCGTGAAGATACTGAAGCCCAGTGCTTAA 1173 0.491 METFLFTSESVNEGHPDKICDQVSDAILDACLEQDPESKVACETCTKTNMVMVFGEITTKAKVNYEKIVRDTCRGIGFVSAEVGLDADKCNVLVNIEQQSPDIAQGVHGHLTKKPEEIGAGDQGHMFGYATDETPELMPLTHVLATKLGAKLTEVRKNKTCPWLRPDGKTQVTVEYRNDNGAMVPIRVHTVLISTQHDETVTNDQIAKDLKEHVIKPVIPAEYLDDKTIFHLNPSGRFVIGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIVRQAAKSVVASGLARRCIVQVSYAIGVPEPLSVFVDTYKTGKIPDKDILALIKENFDFRPGMIAINLDLMRGGNFRYQKTAAYGHFGRDDPDFTWETVKILKPSA 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2421 390 CDD S-AdoMet_synt 5 384 - -
Ssu7g2421 390 Hamap S-adenosylmethionine synthase [metK]. 2 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g2421 390 ProSitePatterns S-adenosylmethionine synthase signature 2. 266 274 IPR022631 GO:0004478|GO:0006556
Ssu7g2421 390 ProSitePatterns S-adenosylmethionine synthase signature 1. 119 129 IPR022631 GO:0004478|GO:0006556
Ssu7g2421 390 Pfam S-adenosylmethionine synthetase, N-terminal domain 4 101 IPR022628 GO:0004478|GO:0006556
Ssu7g2421 390 Pfam S-adenosylmethionine synthetase, C-terminal domain 240 381 IPR022630 GO:0004478|GO:0006556
Ssu7g2421 390 Gene3D - 4 242 - -
Ssu7g2421 390 PANTHER S-ADENOSYLMETHIONINE SYNTHASE 2 1 390 - -
Ssu7g2421 390 SUPERFAMILY S-adenosylmethionine synthetase 240 386 IPR022636 GO:0004478|GO:0006556
Ssu7g2421 390 PIRSF MAT 1 389 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g2421 390 Gene3D - 117 381 - -
Ssu7g2421 390 Pfam S-adenosylmethionine synthetase, central domain 117 238 IPR022629 GO:0004478|GO:0006556
Ssu7g2421 390 SUPERFAMILY S-adenosylmethionine synthetase 3 109 IPR022636 GO:0004478|GO:0006556
Ssu7g2421 390 TIGRFAM metK: methionine adenosyltransferase 5 386 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g2421 390 Gene3D - 11 279 - -
Ssu7g2421 390 PANTHER S-ADENOSYLMETHIONINE SYNTHETASE 1 390 IPR002133 GO:0004478|GO:0005524|GO:0006556
Ssu7g2421 390 SUPERFAMILY S-adenosylmethionine synthetase 115 239 IPR022636 GO:0004478|GO:0006556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2421 Ssu-Chr7 47227518 47228690 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2421 K00789 - gmx:100805448 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2421 7 47227518 47228690 Ssu7g2421 7 47227518 47228690 ECH
Ssu4g0992 4 15809079 15810251 Ssu7g2421 7 47227518 47228690 PCT