Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2179 ATGGCAACCATCTCCGCTACTACCACAACCCCATCGATCACCCGCGCAGGTCTTGTGCAAAAACAGCCTCTTGGGGTCTCATCTCCCGTTCTTGGTTTGCCATCAATGGGTAAGGTGGGAAGAGTGAGGTGCTCCATGGAGAGAAAGCCTTCTGTGAAGGAAAACAGCCCAAGCATGGGGATGGGTGCATCTTTGATGGCAGCTGCCTGCGCTACAGCCATGTCAGGCCCAGCCATGGCCTTGGTGGATGAGAGACTAAGCACTGAAGGAACTGGGCTTCCCTTTGGGCTCAGCAACAACCTTCTTGGTTGGATCCTGTTCGGTGTCTTTGGTCTTATATGGGCTCTCTATTTTCTCTACACTTCAACTCTTGAAGAGGATGAAGAGTCGGGATTGTCCCTTTAA 405 0.5185 MATISATTTTPSITRAGLVQKQPLGVSSPVLGLPSMGKVGRVRCSMERKPSVKENSPSMGMGASLMAAACATAMSGPAMALVDERLSTEGTGLPFGLSNNLLGWILFGVFGLIWALYFLYTSTLEEDEESGLSL 134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2179 134 Pfam Photosystem II reaction centre W protein (PsbW) 1 134 IPR009806 GO:0009507|GO:0009523|GO:0015979
Ssu7g2179 134 PANTHER PHOTOSYSTEM II REACTION CENTER W 1 134 - -
Ssu7g2179 134 PANTHER PHOTOSYSTEM II REACTION CENTER W PROTEIN, CHLOROPLASTIC 1 134 IPR009806 GO:0009507|GO:0009523|GO:0015979
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2179 Ssu-Chr7 42786737 42787425 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2179 K02721 - gmx:100305788 190.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2179 7 42786737 42787425 Ssu7g2179 7 42786737 42787425 ECH
Ssu4g1265 4 20603433 20604232 Ssu7g2179 7 42786737 42787425 PCT