Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g2116 ATGAGGGAGTTTCCTTCTTGTTTTGGAGAAAATGGGGTTCAGGTTGCTGACTCATCCTCATCAAGCACCACAAGAGCAGCTCAAAATGTGGTTACGTGTGTCTATCAGTGCAAATTAAGAGGCCGTTCTTGCTTGATTACAGTCTCGTGGACCAAAACTCTGATGGGTCAAGGCTTGAGTGTGGGAATAGATGACTTGGGAAATCACTGCCTCTGCAAGGTTGAGATAAAGCCATGGCTGTTCTCAAAGAGGAAAGGTTCCAGGAATTTGGAGATCCAATCTGGTAAAATTGACATATTTTGGGATCTGAGTTGTGCTAAGTTTGGTTCAGGGCCTGAGCCATTGGAGGGGTTCTACTTAGCGGTTGTGTTCAACAAGGAGGTGGTGTTGCTCCTAGGGGATCTGAAAAAGGAGGCACGCAAGAAGATTGACAGCGATTGTGCTTTTGCTCACTGTGGCGCCTTTTTTGTTGCAAAGAGAGAGCACATTTTTGGGAAGAAGTTTTATGGTGCAAAGGCTCAGTTTTGTGACAAGGGGCAAGTGCATGATGTCACAATTGAGTGTGACACCGTGAGGCTTACCGATCCCTCTCTTGTGATTCGAATTGATAGCAAGACAGTGATGCAGGTGAAGCGACTCAAGTGGAAATTCCGAGGCAATCACACCATTTTGGTGGACGGGATTCCGGTTGAAGTGTTTTGGGATGTGCATAGTTGGCTCTTTGGGAATGCTATGGGCAATGCAGTGTTCATGTTCCAAACATGCATTTCAACTGACAAGCTGTGGGAAGGCCAGTCAGTTTCTCATCCCTCTGCACTAACATGGGCTTCTTCTCGGCAGTTTAGGGATTCCCAGTTGCAAGGCTTTCGGTTCTCTCTGATTTTGTATGCTTGGAAACATGAGTGA 906 0.4636 MREFPSCFGENGVQVADSSSSSTTRAAQNVVTCVYQCKLRGRSCLITVSWTKTLMGQGLSVGIDDLGNHCLCKVEIKPWLFSKRKGSRNLEIQSGKIDIFWDLSCAKFGSGPEPLEGFYLAVVFNKEVVLLLGDLKKEARKKIDSDCAFAHCGAFFVAKREHIFGKKFYGAKAQFCDKGQVHDVTIECDTVRLTDPSLVIRIDSKTVMQVKRLKWKFRGNHTILVDGIPVEVFWDVHSWLFGNAMGNAVFMFQTCISTDKLWEGQSVSHPSALTWASSRQFRDSQLQGFRFSLILYAWKHE 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g2116 301 PANTHER PLANT/T24G3-80 PROTEIN 1 300 - -
Ssu7g2116 301 Pfam Plant protein of unknown function (DUF868) 27 299 IPR008586 -
Ssu7g2116 301 PANTHER EXPRESSED PROTEIN 1 300 IPR008586 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g2116 Ssu-Chr7 41774120 41775025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g2116 1 301 EF-hand Containing Proteins AT5G28150 61.056 4.50e-127 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g2116 - - gmx:100793503 572.392
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g2116 7 41774120 41775025 Ssu7g2116 7 41774120 41775025 ECH
Ssu4g1307 4 21371641 21372546 Ssu7g2116 7 41774120 41775025 PCT