Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1815 ATGCTGCAGTGCATATTTCTCGTGTCAGATGCCGGAGAGGTAATGCTAGAGAAACAGCTGACGGGGCACCGCGTGGATCGCTCGATATGTGCCTGGGTAGCTGATGTCCTCAATGATTATTTTGGGGCCTTAAACGAAGACATAATTAAAGACAACTTTGTCATTGTTTCAAATGTGAGTGATACCCTTCCATGGGCTACTGCATCTCATGTTCCCTGGAGAACAGCAGAGCCAAAGTACACCAACAATGAAGTCAATGTAGAACTTGTTGAAGCAATGGATGCGATTATAAACAGGGATGGGAGTTTGGTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCCCGTATCTCAGGCCTTCCTGATTTAACCCTTTCATTTACAAATCCTTCCATCCTAGATGATGTGAGAGTTAGAAAGTTGAAGAACACCCCAATATATGTAAAGCCGCAGTTAACTTCAGATGGTGGGACATGCCATGTTAGTGTATTGGTTGGAATAAGAAATGATCCTGGAAAAACAATTGACTCGGTTACTGTTCAGTTTCAACTCCCTCCTTTCATCTTATCAGCTGATCTGACTTCTAATCATGGAACAGTAAACATCCTTGCTAAAAAGACATGCATATGGTCAATTGGTCGGATCCCAAAAGATAAAGCCCCTTCCATGTCTGGAACATTAGTGATTGAAACTGGATTGGAGCGCCTACATGTCTTCCCTACATTTCAGGTGGGTTTTAGGATTATGGGTGTCGCCCTTTCTGGTCTGCAAATAGATAAACTGGATCTGAAGACTATACCAAACAGATTTTACAAAGGTTTTCGAGCTCTTACTCGGGCAGGTGAATTTGAATTATTCTTTGGTGAACCTAACTGTGGTTATCTGACTGAATCTCGTGGTTATATGAGGTCAATGGAGTTTGCTTCCGTCTCATTATCAAGTGGAGCAAACCATCTGCATTCCTAG 969 0.4211 MLQCIFLVSDAGEVMLEKQLTGHRVDRSICAWVADVLNDYFGALNEDIIKDNFVIVSNVSDTLPWATASHVPWRTAEPKYTNNEVNVELVEAMDAIINRDGSLVKCEIYGEVQVNSRISGLPDLTLSFTNPSILDDVRVRKLKNTPIYVKPQLTSDGGTCHVSVLVGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVNILAKKTCIWSIGRIPKDKAPSMSGTLVIETGLERLHVFPTFQVGFRIMGVALSGLQIDKLDLKTIPNRFYKGFRALTRAGEFELFFGEPNCGYLTESRGYMRSMEFASVSLSSGANHLHS 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1815 322 Gene3D Mu homology domain, subdomain B 146 251 - -
Ssu7g1815 322 PANTHER AP COMPLEX SUBUNIT MU 33 285 - -
Ssu7g1815 322 Pfam Adaptor complexes medium subunit family 71 137 IPR028565 -
Ssu7g1815 322 Pfam Adaptor complexes medium subunit family 140 285 IPR028565 -
Ssu7g1815 322 Gene3D Mu homology domain, subdomain B 66 145 - -
Ssu7g1815 322 ProSiteProfiles Mu homology domain (MHD) profile. 82 287 IPR028565 -
Ssu7g1815 322 PANTHER CARMINE, ISOFORM A 33 285 - -
Ssu7g1815 322 CDD AP-3_Mu3_Cterm 71 285 - -
Ssu7g1815 322 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 71 286 IPR036168 -
Ssu7g1815 322 PIRSF AP_complex_mu 1 34 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ssu7g1815 322 PIRSF AP_complex_mu 136 288 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ssu7g1815 322 PIRSF AP_complex_mu 57 138 IPR001392 GO:0006886|GO:0016192|GO:0030131
Ssu7g1815 322 PIRSF AP_complex_mu 30 63 IPR001392 GO:0006886|GO:0016192|GO:0030131
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1815 Ssu-Chr7 36735519 36738086 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1815 K12398 - gmx:100782926 429.098
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1815 7 36735519 36738086 Ssu7g1815 7 36735519 36738086 ECH
Ssu4g0448 4 7311729 7315399 Ssu7g1815 7 36735519 36738086 PCT