Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1457 ATGTCTCGAATGCTTTTCTCCGTATGGAACAAGAAGAAGCTGCAACTCAACTTAATCCCcactattttctcttcttcacACGCCCACTTCACTCTCCCACCCACCCACTTCAAGAACCCCAAGTTCAACGCTCACGGTGGCGGCAATAGTGGGCCACTCCGGCCCAGTTTGAGACTCTACAGTAGTAGCAATGGGGAGCCACCAGAGGATTGGCCCCGCGATGCTGGTGCGGCTGCGCAAACTCCTCTTAGTGTTAATTTTATTCGGGCCGCTGGGCCCAGGGACGAGAACAACACGGGGTGGGTCGGAGGGTCCAATTTGGGTAGGGATTTTCCGACCCCGAAGGAAATCTGCAAGGGTCTCGACAGGTTTGTTATTGGGCAGGACAGGGCCAAGAAGGTGCTCTCCGTAGCGGTTTATAACCACTACAAAAGAATATACCACGCCTCTTTGAGCAACGGGTCAGGGGCAGATGCAGGAGTCTCAGAAGGAttggatgatgatgataatgtgGAGCTAGAAAAGAGTAATGTTCTCTTGATGGGTCCAACGGGTTCAGGGAAGACGTTACTTGCGAAAACACTAGCTCGATTTGTGAATGTTCCGTTTGTCATTGCCGATGCAACTACCCTAACACAGGCTGGTTATGTTGGAGAAGATGTTGAATCAATATTGTATAAACTACTTGCGGCAGCAGAGTTCAATGTTCAAGCAGCTCAACAAGGGATTGTTTATATTGATGAAGTGGACAAGATAACTAAGAAGGCTGAGAGCTTGAATATTAGCCGGGATGTTTCTGGTGAGGGTGTTCAGCAGGCATTATTAAAAATGCTGGAAGGAACTATAGTAAATGTTCCTGAGAAAGGAGCAAGGAAGCATCCACGGGGTGATAACATACAGATTGACACAAAGAacattctttttatatgtgGTGGAGCATTTGTTGATCTTGAAAAAACCATTTCAGAgagACGACAAGATTCTTCGATTGGTTTTGGAGCGCCAGTCCGTGCCAATATGAGAACTGATGGAGTTACAAATGTTGCAGTCACATCATCTTTACTTGAGTCGGTGGAAAGTGCTGATCTTATTGCATATGGTCTCATACCAGAGTTTATAGGACGATTTCCAATCTTAATCAGCTTGTCAGCTCTGACCGAAGACCAACTTATGCAGGTCCTCACAGAACCAAAAAATGCTCTTGCTAAGCAGTACaagaaattatttaacatgaataatGTAAAGCTACACTTCACACAGAAAGCTCTGAGATTGATTGCAAAGAAAGCAATGGCCAAAAATACTGGTGCCAGGGGTTTAAGAGCACTACTGGAAAGCATTTTAACTGAAGCCATGTTTGAGATTCCAGATGTTAAAGCAGGAAATGAACTGATTGATGCAGTTGTCGTTGATGAGGAGTCAGTAGGATCAGTGAATGCCCCTGGGTGTGGGGGAAAAATTCTTTGTGGAGATGGCGCTTTGGAGCTGTACCTAGCTAAGATGGAGGGTTCAGTGGTTAACGGGGACGTAGCTGAACCAGACTTACAAGAGGGGGAAACAGAGATTTCATCAAGAGCCATGAgcatgtaa 1590 0.439 MSRMLFSVWNKKKLQLNLIPTIFSSSHAHFTLPPTHFKNPKFNAHGGGNSGPLRPSLRLYSSSNGEPPEDWPRDAGAAAQTPLSVNFIRAAGPRDENNTGWVGGSNLGRDFPTPKEICKGLDRFVIGQDRAKKVLSVAVYNHYKRIYHASLSNGSGADAGVSEGLDDDDNVELEKSNVLLMGPTGSGKTLLAKTLARFVNVPFVIADATTLTQAGYVGEDVESILYKLLAAAEFNVQAAQQGIVYIDEVDKITKKAESLNISRDVSGEGVQQALLKMLEGTIVNVPEKGARKHPRGDNIQIDTKNILFICGGAFVDLEKTISERRQDSSIGFGAPVRANMRTDGVTNVAVTSSLLESVESADLIAYGLIPEFIGRFPILISLSALTEDQLMQVLTEPKNALAKQYKKLFNMNNVKLHFTQKALRLIAKKAMAKNTGARGLRALLESILTEAMFEIPDVKAGNELIDAVVVDEESVGSVNAPGCGGKILCGDGALELYLAKMEGSVVNGDVAEPDLQEGETEISSRAMSM 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1457 529 Pfam C-terminal, D2-small domain, of ClpB protein 385 455 IPR019489 -
Ssu7g1457 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 471 IPR027417 -
Ssu7g1457 529 Gene3D - 106 383 IPR027417 -
Ssu7g1457 529 SMART ClpB_D2_small_2 385 478 IPR019489 -
Ssu7g1457 529 TIGRFAM clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 108 475 IPR004487 GO:0005524|GO:0006457|GO:0051082|GO:0140662
Ssu7g1457 529 SMART AAA_5 174 336 IPR003593 -
Ssu7g1457 529 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED 91 506 - -
Ssu7g1457 529 CDD AAA 175 286 - -
Ssu7g1457 529 Gene3D - 384 484 - -
Ssu7g1457 529 PANTHER OS01G0886600 PROTEIN 91 506 - -
Ssu7g1457 529 MobiDBLite consensus disorder prediction 39 76 - -
Ssu7g1457 529 Pfam AAA domain (Cdc48 subfamily) 174 378 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1457 Ssu-Chr7 31043205 31050768 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1457 178 277 Miscellaneous Gene Families AT3G02450 36.634 2.49e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1457 K03544 - gmx:100818418 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1457 7 31043205 31050768 Ssu7g1457 7 31043205 31050768 ECH
Ssu7g1457 7 31043205 31050768 Ssu7g1457 7 31043205 31050768 PCT