Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1454 ATGTTCTACTTCCTCAGAAGATTATGCCTTCTATGTTTCCTCTTGCTATCCTTTGACGTTTCACTGTCATTATGTGCTTCGCTCAGAGACTTGGTTTCTTGCTTGGatagtcacaaaataaaaaacttcacCACGTTCCCTTACAAAGAACATGATCAATCCTCTTCCTATAATTACTtcaaaattctcaatttttccATTCAAAACCTTCGGTTTGCAGAACCTGCGATTCCTAAGCCAATAGCCATTGTACTGCCGGAGAGTTTGGAGCAGCTACAGAAAAGTGTAGCATGCTGTAGAGAAGGCTACTTGGCAATCAGAGTAAGATGTGGTGGACATAGCTATGAAGGGACTTCGTATGTTGCTGATGACGGCACTCCTTTTGTCATCATTGATATGATGAATTTGAACCATGTTTGGGTGGACATGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACATTGGGAGAGACTTACTATGCAATCTCTCAGGCAAGCAATCTACATGGATTCTCAGCTGGGTCATGTCCAACTGTTGGAGTTGGAGGGCACATTGGTGGTGGTGGATTTGGGTTGTTGTCTAGAAAGTATGGTCTCGCAGCTGACAACGTGCTGGATGCCCTTCTTGTTGATGCTGATGGAGAATTGTTTGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGAGGTGGTGGTCTTTGGGGGATCATCTATGCCTGGAAAATCCAGGTGTTGAAAGTGCCACAAATTGTAACTAGTTTCATTGTATCTAGAAGAGGCACAAGAAGTCATGTTGCCAAGCTAGTGCACAAATGGCAATATGTGGCACCCAACTTGGAAGATGGCTTCTACTTGTCTTGCTTTGTTGGTGCTGGTTTGCCCCAAGCTAAAACCACAGGGTTATCAACAACGTTTAAAGGCTTTTTTCTTGGTCCTAGGGTCAGTGCCATATCCATCCTAAACCAGGCTTTTCCTGAGTTGGGTATTGTAGAAGAGGAATGCATAGAAATGAGTTGGATTCAGTCGATTGTTTTCTTCTCTGGCCTAAGCGATGGAGCCTCGGTCTCTGACTTGAAGAACAGGTATCtgcaagaaaaagaatatttcaAGGCCAAATCAGATTATGTAAAGAACCATGTTCCTCTTGTGGGCGTAGAAACTGCACTGGACATACTCGAAAAGGAGCCTAAGGGATATGTTATTTTGGACCCTTATGGTGGAAAGATGCATAATATAAGCAGTGAATCTATTGCTTTTCCCCACAGAAGAGGAAACTTGTTTACAATTCAGTATCTGATCTACTGGAAAGAAGCTGACAATGACAAAAGCAGTGATTATGTTGATTGGATAAGAGGATTCTATGCTGCCATGACTCCCTTTGTTTCACGGGGTCCAAGGGCTGCATATATTAACTACATGGACTTTGACCTCGGAGTGATGAAGCGGATAAGGAATGGCGCTAATGTGAAAGATTCTGTGGAAAATGCAAAGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGACTGGTGAGGGCCAAGACTCTGATTGATCCTAACAATGTTTTCACCAATGAACAGGGCATTCCTCCCATATCTTTGACCAGTCCCAAGGTCAAAGCACAGAACAAATAA 1653 0.4211 MFYFLRRLCLLCFLLLSFDVSLSLCASLRDLVSCLDSHKIKNFTTFPYKEHDQSSSYNYFKILNFSIQNLRFAEPAIPKPIAIVLPESLEQLQKSVACCREGYLAIRVRCGGHSYEGTSYVADDGTPFVIIDMMNLNHVWVDMETETAWVEGGATLGETYYAISQASNLHGFSAGSCPTVGVGGHIGGGGFGLLSRKYGLAADNVLDALLVDADGELFDRETMGEDVFWAIRGGGGGLWGIIYAWKIQVLKVPQIVTSFIVSRRGTRSHVAKLVHKWQYVAPNLEDGFYLSCFVGAGLPQAKTTGLSTTFKGFFLGPRVSAISILNQAFPELGIVEEECIEMSWIQSIVFFSGLSDGASVSDLKNRYLQEKEYFKAKSDYVKNHVPLVGVETALDILEKEPKGYVILDPYGGKMHNISSESIAFPHRRGNLFTIQYLIYWKEADNDKSSDYVDWIRGFYAAMTPFVSRGPRAAYINYMDFDLGVMKRIRNGANVKDSVENAKVWGEKYFLSNYDRLVRAKTLIDPNNVFTNEQGIPPISLTSPKVKAQNK 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1454 550 Gene3D - 30 136 IPR016167 -
Ssu7g1454 550 Pfam FAD binding domain 80 218 IPR006094 GO:0050660
Ssu7g1454 550 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 21 542 - -
Ssu7g1454 550 SUPERFAMILY FAD-binding/transporter-associated domain-like 71 253 IPR036318 GO:0050660
Ssu7g1454 550 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Ssu7g1454 550 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Ssu7g1454 550 Gene3D - 141 537 IPR016169 -
Ssu7g1454 550 Gene3D - 255 469 - -
Ssu7g1454 550 PANTHER OS08G0158400 PROTEIN 21 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1454 Ssu-Chr7 31033800 31035452 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1454 29 536 Miscellaneous Gene Families AT1G30760 41.992 7.53e-131 391
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1454 - - gmx:100790761 962.985
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1454 7 31033800 31035452 Ssu7g1454 7 31033800 31035452 ECH