Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g1428 ATGGCAGATCAAACCCCGGATTCGGGAACCGTTTCTGTTGAAGCTTCCCAAGAAAGAAGGAAACTTCCAAACTTTCTGCTATCTGTGAGACTTAAGTATGTGAAGCTTGGGTACCATTACTTAATCTCCAATGCTATGTACCTTTTGCTCATACCCCTTCTTGGGGTAGCTTCTGCTCATCTATCAACTATCTCTCACCAAGATGTTGTTCAACTATGGGAAAACCTCAAGTTCAATCTTGTCTCAGTGACTCTATGTTCTAGTTTTATAGTATTCCTTGTCACTTTTTACTTCATGAGCCGCCCAAGGGGTGTTTACTTGGTGGATTTTGCTTGTTACAAGCCAGAGCCAGACTGCACTTGCACAAGGGAGATTTTCATGGACAGGTCTGTGCAAACTGGGGTCTTTTCAGAGGAGAACTTGGCCTTTCAGAAGAAGATACTTGAGAGGTCTGGTTTGGGGCAGAAGACTTACTTGCCTCCAGCAATCTTGACTGTGCCAGCAAACCCGTGTATGGCTGAAGCAAGGAAAGAAGCGGAGCAAGTCATGTTTGGAGCTATTGACCAGCTTCTGGCAAAAACTGGGGTCAAGGCTAAGGATATTGGGATCTTGGTGGTGAATTGCAGCTTGTTCAATCCCACACCATCTCTCTCTGCGATGATTGTGAACCACTACAAGTTGAGAGGGAATATCCTGAGCTACAATCTCGGTGGCATGGGTTGCAGTGCCGGCCTTATCTCTATAGACCTTGCCAAGCAGCTCCTCCAGgttcaTCCAAACTCTTATGCCTTAGTGGTGAGCATGGAGAACATCACTCTCAACTGGTATTTTGGCAACAACCGGTCAATGCTAGTCTCAAATTGTCTCTTTAGAATGGGTGGAGCTGCAGTCCTCCTCTCCAACAAGCCTTCTGATCGCAGAAGAGCCAAATACCAACTGATCCATACAGTGCGTACTCATAAGGGTGCCGATGACAAATCTTATGGCTGTGTCTTCCAAGAAGAAGATGAGAAGAAAACAATTGGTGTGGCACTCTCAAAGGACTTAATGGCCGTTGCTGGAGAAGCCCTCAAGACCAATATCACAACACTTGGCCCATTAGTCCTTCCCATGTCAGAGCAGCTCTTGTTTTTTGCAACTTTGGTGGCTAAAAAAGTGTTCAAGATGAAAATAAAGCCATACATCCCAGACTTTAAGCTAGCTTTTGAGCACTTTTGCGTCCATGCTGGAGGAAGAGCAGTGTTGGATGAGTTGGAGAAAAATCTAGAGCTCACTGATTGGCACATGGAGCCTTCAAGAATGACTCTGTACAGGTTTGGTAACACTTCTAGCAGTTCATTGTGGTATGAATTGGCCTACACTGAAGCTAAAGGGAGGATCAGGAAGGGTGACAGGACTTGGCAGATTGCATTTGGTTCTGGATTCAAGTGCAACAGTGCTGTGTGGCGTGCATTGAGGACCATTAATCCAGGGAAGGAGAAAAATCCTTGGATGGATGAGATTCAAGAGTTTCCTGTTCATGTGCCCAAAGTGGCAACCATTGGTTCCTAA 1551 0.4545 MADQTPDSGTVSVEASQERRKLPNFLLSVRLKYVKLGYHYLISNAMYLLLIPLLGVASAHLSTISHQDVVQLWENLKFNLVSVTLCSSFIVFLVTFYFMSRPRGVYLVDFACYKPEPDCTCTREIFMDRSVQTGVFSEENLAFQKKILERSGLGQKTYLPPAILTVPANPCMAEARKEAEQVMFGAIDQLLAKTGVKAKDIGILVVNCSLFNPTPSLSAMIVNHYKLRGNILSYNLGGMGCSAGLISIDLAKQLLQVHPNSYALVVSMENITLNWYFGNNRSMLVSNCLFRMGGAAVLLSNKPSDRRRAKYQLIHTVRTHKGADDKSYGCVFQEEDEKKTIGVALSKDLMAVAGEALKTNITTLGPLVLPMSEQLLFFATLVAKKVFKMKIKPYIPDFKLAFEHFCVHAGGRAVLDELEKNLELTDWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIRKGDRTWQIAFGSGFKCNSAVWRALRTINPGKEKNPWMDEIQEFPVHVPKVATIGS 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g1428 516 CDD CHS_like 87 482 - -
Ssu7g1428 516 Gene3D - 118 484 IPR016039 GO:0016746
Ssu7g1428 516 SUPERFAMILY Thiolase-like 290 486 IPR016039 GO:0016746
Ssu7g1428 516 PANTHER 3-KETOACYL-COA SYNTHASE 17 513 - -
Ssu7g1428 516 PIRSF Very_long_ch_3-ktacl-CoA_syn 24 516 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu7g1428 516 Pfam FAE1/Type III polyketide synthase-like protein 97 386 IPR013601 GO:0006633|GO:0016020|GO:0016747
Ssu7g1428 516 PANTHER 3-KETOACYL-COA SYNTHASE 17 513 IPR012392 GO:0006633|GO:0016020|GO:0016747
Ssu7g1428 516 SUPERFAMILY Thiolase-like 91 309 IPR016039 GO:0016746
Ssu7g1428 516 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 403 483 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g1428 Ssu-Chr7 30675384 30677617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g1428 13 514 Miscellaneous Gene Families AT2G26640 76.892 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g1428 K15397 - gmx:100785983 996.497
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g1428 7 30675384 30677617 Ssu7g1428 7 30675384 30677617 ECH