Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0857 ATGGCCAAAAGCAAAAACTCCCATGCTTTGCCTCTTCTCCTCCCCCTCCTCCTCTTCACTCTTGTTGGAACCTCTCATGCCGGTGGCATAGCCATCTACTGGGGCCAAAACGGCAACGAGGGCACCCTCTCCGAAGCATGTGCCACGGGGAAGTACACTCACGTAAACATAGCTTTCCTCAACAAATTTGGCAATGGCCAAACCCCAGAAATGAACCTGGCTGGTCACTGCAACCCGGCAACCAATTCCTGCACAAAGTTCAGTGCTGACATCAAGGACTGCCAAAGCAAAGGCATCAAGGTGTTGCTTTCCATCGGCGGTGGAATTGGAAGCTACTCTTTGGCTTCCGTTGAGGATGCAAGAAACGTTTCAACATTCTTGTGGAACACTTTCTTGGGGGGCAAGTCATCCTCAAGGCCACTAGGGGATGCTGTGTTAGATGGCATAGATTTTGACATAGAACTCGGCTCCACAGAAAACTATGAGCACCTTGCACGTTTCCTTAAGGCATATAGCGGGTTAGGGAAGAGGGTGTACCTAGGTGCTGCTCCTCAGTGTCCAATTCCTGATAGGTTCTTGGGCACTGCCCTTAACACAGGCCTATTTGACTTTGTTTGGGTTCAGTTCTACAATAACCCTCCTTGTCAGTATGCTAATGGTAACATAACTAACCTTGTGAATTCATGGAACCGGTGGACTAGTACAGTGCCAGCAGGGCAGATATTTTTGGGGCTGCCGGCTGCTCCGGCCGCCGCTGGCAGCGGTTTCGTCCCCGCCGATGTGTTGACATCTCAAATCCTGCCCGTGATTAAGAAGTCACCAAAATATGGTGGGGTGATGCTGTGGTCAAGATTCTATGATGTCCAGAACGGGTATAGTACTTCCATTATTGGCAGCGTGTGA 903 0.5017 MAKSKNSHALPLLLPLLLFTLVGTSHAGGIAIYWGQNGNEGTLSEACATGKYTHVNIAFLNKFGNGQTPEMNLAGHCNPATNSCTKFSADIKDCQSKGIKVLLSIGGGIGSYSLASVEDARNVSTFLWNTFLGGKSSSRPLGDAVLDGIDFDIELGSTENYEHLARFLKAYSGLGKRVYLGAAPQCPIPDRFLGTALNTGLFDFVWVQFYNNPPCQYANGNITNLVNSWNRWTSTVPAGQIFLGLPAAPAAAGSGFVPADVLTSQILPVIKKSPKYGGVMLWSRFYDVQNGYSTSIIGSV 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0857 300 SUPERFAMILY (Trans)glycosidases 25 296 IPR017853 -
Ssu7g0857 300 PANTHER ACIDIC ENDOCHITINASE 4 300 - -
Ssu7g0857 300 CDD GH18_hevamine_XipI_class_III 28 298 IPR045321 -
Ssu7g0857 300 PANTHER ENDOCHITINASE 4 300 - -
Ssu7g0857 300 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 146 154 IPR001579 GO:0004553|GO:0005975
Ssu7g0857 300 Pfam Glycosyl hydrolases family 18 30 287 IPR001223 GO:0005975
Ssu7g0857 300 Gene3D Glycosidases 28 300 - -
Ssu7g0857 300 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 28 300 IPR001223 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0857 Ssu-Chr7 17556801 17557703 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0857 28 300 Glycoside Hydrolase AT5G24090 68.864 2.01e-149 419
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0857 K01183 - gmx:100818728 562.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0857 7 17556801 17557703 Ssu7g0857 7 17556801 17557703 ECH
Ssu7g0857 7 17556801 17557703 Ssu7g0857 7 17556801 17557703 PCT