Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0836 ATGGAAAAAACATATCATATAACACCGAAGTTGGATCACTATGTGTGTTTAGTTGATCTCCTCGGTAGAGGTGGTCGCCTAGAGGAAGCTATGGGAGTTATTGAAACAATGCCTTTCAAGCCAGAATCtgtaatttataaaactttattgaAAGCTTGCAACTTACATGGAAATGTTCCACTGGGAGAAGATATGGCAAGGAGATGTCTTGAGCTTGATCCATCTGACCCTGCAATATATTTGCTGCTTGCAAGCTTGTATGACAATGCTGGACTCTCTGACTTCGGTGACAAGACTCGCAAGCTGATGAGAGAAAGAGGCTTAAGAAGAAGTCCTAGGCAGTGTTGGATAGAGGTAAGAAGTAAGATTTATTTCTTCTCTGCAAGAGAGAAGATAGATAAGGATGAGATTAATGAAAAGCTAGAGTTTCTTATAACTGAAATAAAGACTAGAGGGTATCCATaccaagagaaaaaagatatgTTATACCACTCAGAGCAAGTAGCCCTTGCATTTGGTGTTCTTAGTGTACCAACTCTGGCTCCAATACGCATAAACAAGAATTCACTTATCTGCACTCACTGTCATTCTTTTATAATGTTTGTGACACAATTTGTTGATAGGGAGATAATTGTGAGGGATAGGAAACGTTTCCATTTCTTTAAGGATGGCCAGTGTTCATGTAGAGGTCACTCATAA 699 0.3763 MEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPESVIYKTLLKACNLHGNVPLGEDMARRCLELDPSDPAIYLLLASLYDNAGLSDFGDKTRKLMRERGLRRSPRQCWIEVRSKIYFFSAREKIDKDEINEKLEFLITEIKTRGYPYQEKKDMLYHSEQVALAFGVLSVPTLAPIRINKNSLICTHCHSFIMFVTQFVDREIIVRDRKRFHFFKDGQCSCRGHS 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0836 232 Gene3D Tetratricopeptide repeat domain 1 147 IPR011990 GO:0005515
Ssu7g0836 232 Pfam E motif 56 118 IPR046848 -
Ssu7g0836 232 PANTHER - 1 226 - -
Ssu7g0836 232 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 226 - -
Ssu7g0836 232 Pfam DYW family of nucleic acid deaminases 155 230 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0836 Ssu-Chr7 16776644 16777342 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0836 1 231 Glycoside Hydrolase AT3G49170 39.357 9.66e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0836 - - gmx:100791770 443.736
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0836 7 16776644 16777342 Ssu7g0836 7 16776644 16777342 ECH