Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0823 ATGATATTGGGAACACTAAATGTGGAGGTAGCAGAATGCTGGGTAGCTAGTGGATTGAGCAACATTGAATACCCTGCCATCAATTGCCGAAAGCATAGTGCAGTTTTGACAGATTTCGGTGGGGTTGGTGATGGCAAAACATCCAAGACGAAGGCCTTTCAATCTGCAATAAGCAAACTCAGCCAGTATGCTTCTGATGGGGGTGCACAACTTATCGTGCCACCTGGGAAATGGCTAACGGGATCCTTTAATCTCACAAGCCATTTCACTCTTTTTCTCCATAAGGATGCTATTCTTCTTGCATCTCAGGATGAATCAGAGTGGCCCCAACTTCCTGTACTACCTTCTTATGGAAGAGGAAGAGATGCTCCGAGTGGAAGGTTTAGCAGTCTAATTTTTGGAACTAACCTCACCGATGTCGTAATTACTGGTCAAAATGGTACAATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAAGCAGTTGAAACTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCAAATCTCACTTTGGTCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAACATAATAATACAAGGGCTTACCATTCTTGCACCAGTGGACTCTCCCAACACAGATGGGATAGACCCAGATTCATGTACAAACACCAAGATTGAAGACTGCTACATTGTTTCCGGTGATGATTGTGTTGCAGTAAAAAGTGGCTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACCCACCACCTAATCATTAGAAGGCTTACTTGTATATCCCCTGATAGTGCTATGATTGCTTCAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAAATATCACTGCTATCAACACTGAATCAGCAGTTAGAATCAAAACAGCAGTTGGTAGAGGTGCTTATGTGAAAGACATATTTGTCAAAGGAATGACCCTCAACACCATGAAATATGTATTTTGGATGACAGGCTCTTATGGATCACACCCTGACACTGGATTTGATCCCAAAGCACTTCCTAACATTACTGGAATAAATTGCAGAGATGTTCTTGCAAAGAACGTCACGTATTCTGCAAAACTTGAAGGGATTTCCAATGACCCTTTCACAGGAATCTGCATTTCTAATGTGAATATCCAAGTGagtgaacaaaaaaagaagcttCAATGGAACTGCACTGATGTTGCAGGAGTTTCAAGCAATGTCACTCCTAACCCTTGTCAATTGCTGCCAGAGAAAGGGAAATTCGATTGTCCTTTTCCAAATGACACACTGCCCATTGAAAATGCTCAGTTGAAGACTTGTTCCTTTGTAAATGTCTTCTCCTAA 1377 0.4147 MILGTLNVEVAECWVASGLSNIEYPAINCRKHSAVLTDFGGVGDGKTSKTKAFQSAISKLSQYASDGGAQLIVPPGKWLTGSFNLTSHFTLFLHKDAILLASQDESEWPQLPVLPSYGRGRDAPSGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFHKKQLKLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGIDPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTHHLIIRRLTCISPDSAMIASGSEMSGGIQDVRAENITAINTESAVRIKTAVGRGAYVKDIFVKGMTLNTMKYVFWMTGSYGSHPDTGFDPKALPNITGINCRDVLAKNVTYSAKLEGISNDPFTGICISNVNIQVSEQKKKLQWNCTDVAGVSSNVTPNPCQLLPEKGKFDCPFPNDTLPIENAQLKTCSFVNVFS 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0823 458 Gene3D - 15 421 IPR012334 -
Ssu7g0823 458 SUPERFAMILY Pectin lyase-like 29 428 IPR011050 -
Ssu7g0823 458 PANTHER PECTIN LYASE-RELATED 1 452 - -
Ssu7g0823 458 Pfam Glycosyl hydrolases family 28 130 412 IPR000743 GO:0004650|GO:0005975
Ssu7g0823 458 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 1 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0823 Ssu-Chr7 16534855 16538533 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0823 20 451 Glycoside Hydrolase AT3G48950 71.625 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0823 - - gmx:100779166 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0823 7 16534855 16538533 Ssu7g0823 7 16534855 16538533 ECH
Ssu7g0823 7 16534855 16538533 Ssu7g0823 7 16534855 16538533 PCT