Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0822 ATGAGTACtGTCATTGGTGTGATCTCCGTAGTTCTGATATTGGGATCACTAAATGTGAAGGTAGCAGAATGCAGGGTAGCCAGTGGATTGGGCAACATTGAATATCCTGCAATCAATTGTCGAAAGCATAGTGCAGTTTTGACAGATTTCGGTGGGGTTGGTGATGGAAAAACATCCAACACCAAGGCCTTTCAATCTGCAATAAGCAAACTCAGCCAATATGCATCTGACGGGGGTGCACAACTAATTGTGCCCCCTGGGAAATGGCTAACGGGACCCATCAATCTCACAAGCCATTTCACTCTTTTCCTCCAAAAGGATGCTGTTCTTCTAGCATCTCAGGTTGAATCAGAATGGCCCCAACTTCCTGTACTACCTTCTTATGGAAGAGGAAGAGATGCTCCTGATGGAAGGTTTAGCAGTCTAATTTTTGGAACTAACCTCACCGATGTTGTAATTACTGGTCAAAATGGTACAATTGATGGGCAAGGATCTTATTGGTGGGACAAGTTCCACAAGAAGCAGTTGAAACTCACCAGGCCATACATGATTGAGATCATGTACTCTGATCAAATCCAAATATCAAATCTCACTTTGGTCAACTCCCCATCCTGGTTTGTCCATCCAATTTACAGCAGTAACATAATAATACAAGGGCTTACCATTCTTGCACCAGTGGACTCTCCCAACACAGATGGGATAGACCCAGATTCATGTACAAACACCAGGATTGAAGACTGCTACATTGTTTCCGGGGATGATTGTGTTGCAGTAAAAAGTGGCTGGGATGAGTATGGAATTAAATTTGGAAAGCCAACCCAACACCTAATCATTAGAAGGCTTACTTGTATATCCCCTGATAGTGCTATGATTGCTTTAGGCAGTGAAATGTCTGGTGGAATCCAAGATGTTAGAGCTGAAAATATCACTGCTATCAACACTGAATCAGCAGTTAGAATCAAAACAGCAGTTGGTAGAGGTGCTTATGTGAAAGACATATTTGTCAAAGGAATGACCCTCAACACCATGAAATATGTATTTTGGATGACAGGCTCTTATGGATCACACCCTGACACTGGATTTGATCCCAAAGCACTTCCTAACATTACTGGAATAAATTATAGAGACGTTGTTGCAAAGAACGTCACATATTCCGCAAAACTTGAAGGAATTTCCAGTGACCCTTTTTCAGGAATCTGCATTTCTAATGTGAATATCCAAGTGAGTGAACAGAAAAAGAAGCTTCAATGGAATTGCACTGATGTTGCTGGAGTTACAAGCAATGTCACTCCTAACTCTTGTCAATTGCTGCCAGAGAAAGGGAAATTCGATTGCCCTTTTCCAAATGACAAACTGCCCATTGATAATGTTCAATTGAAGACCTGTTCCTCTAAAAATGTCTTCTTCTAA 1410 0.4149 MSTVIGVISVVLILGSLNVKVAECRVASGLGNIEYPAINCRKHSAVLTDFGGVGDGKTSNTKAFQSAISKLSQYASDGGAQLIVPPGKWLTGPINLTSHFTLFLQKDAVLLASQVESEWPQLPVLPSYGRGRDAPDGRFSSLIFGTNLTDVVITGQNGTIDGQGSYWWDKFHKKQLKLTRPYMIEIMYSDQIQISNLTLVNSPSWFVHPIYSSNIIIQGLTILAPVDSPNTDGIDPDSCTNTRIEDCYIVSGDDCVAVKSGWDEYGIKFGKPTQHLIIRRLTCISPDSAMIALGSEMSGGIQDVRAENITAINTESAVRIKTAVGRGAYVKDIFVKGMTLNTMKYVFWMTGSYGSHPDTGFDPKALPNITGINYRDVVAKNVTYSAKLEGISSDPFSGICISNVNIQVSEQKKKLQWNCTDVAGVTSNVTPNSCQLLPEKGKFDCPFPNDKLPIDNVQLKTCSSKNVFF 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0822 469 PANTHER PECTIN LYASE-RELATED 8 463 - -
Ssu7g0822 469 PANTHER ENDO-POLYGALACTURONASE-LIKE PROTEIN 8 463 - -
Ssu7g0822 469 SUPERFAMILY Pectin lyase-like 40 439 IPR011050 -
Ssu7g0822 469 Pfam Glycosyl hydrolases family 28 140 423 IPR000743 GO:0004650|GO:0005975
Ssu7g0822 469 Gene3D - 30 435 IPR012334 -
Ssu7g0822 469 Pfam Pectate lyase superfamily protein 48 103 IPR024535 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0822 Ssu-Chr7 16521347 16524451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu7g0822 33 462 Glycoside Hydrolase AT3G48950 71.954 0.0 671
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0822 - - gmx:100779166 872.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0822 7 16521347 16524451 Ssu7g0822 7 16521347 16524451 ECH