Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu7g0813 ATGGACGCTCCCCTGCTGGATAGCACGTGGGCGGCGTTGGTGGCGGAGGACGGCGACTACGCGGCGGTGAAGGGGTTGAAGGAGGCGAGGAAGGTGTTCTGGATTGAAACCAAGAGAATATGGCAGATTGCGTTGCCTATTGTTTTCAACATATGGTGCCAATACGGTGTCAACTCCATCACCAACATCTTCGTTGGTCACCTCGGCGACATTGAGCTCTCTGCTGTCTCCCTCATTAACTCCGTCATTGGAACTTTCGCTTTTGGTTTCATGCTTGGGATGGGGAGTGCAACTGAGACGCTTTGTGGTCAAGCATTTGGAGCTGGGCAGGTTCATTTGCTTGGTGTTTATATGCAACGCTCGTGGGTAATTTTATTCGTGACCAGTATTTTGCTCTTGCCAATATACATTTTTGCTGCTCCAATTTTGAAGCTTCTTGGTCAACAGAAAGATATAGCTGATCTTGCTGGGAGTTTCGCTATTTTAGTAATTCCGCAATTTCTTTCACTGCCCTTTAATTTTCCGACTCAAAAGTTCCTTCAAGCTCAGAGTAAGGTTAATGTCATTGCATGGATTGGGTTGGTGGCTTTAATTCTGCACATTGGGTTTCTCTGGCTCTTAATTTATGTGTTAGATTTAGGCTTAGTTGGTGCAGCTTTGGCATTTGATGTCACAAGTTGGGGGATTACAGTGGCTCAACTTGTTTATGTTGTGATCTGGTGTAAAAAAGAGTGGAATGGATTGTCATGGTTGGCTATTAAGGATATTTGGGCCTTTGTTAGGCTCTCTCTTGCATCAGCTGTAATGCTTTGCCTTGAAGTTTGGTATATGATGAGCGTCATAGTCCTTGCTGGTCACCTTGATAATGCAGTGATTGCTGTTGATTCCCTCTCTATATGCATGAATATCAATGGGTGGGAAGGCATGATCTTCATTGGAGTAAATGCAGCTATCAGTGTCAGAGTTTCCAATGAACTTGGGCTTGGACATCCAAGAGCTGCCAAGTACTCTGTCTATGTGACGGTCTTTCAGTCGCTTCTCTTGGGAATCCTTTTCATGGCTATAATTTTGGTGGCTAAAGACTATTATGCCATCATTTTTACAAACAGTGAGGTTTTGCATAAGGCCGTCGCAAAACTAGGATTCCTACTTGCTGTGACAATGGTTCTAAACAGTGTTCAACCAGTGATTTCAGGTGTTGCTGTTGGAGGTGGGTGGCAGGCCCTGGTGGCCTACATCAACATAGGTTGTTATTACTTATTTGGGCTTCCACTGGGGTTCCTTCTTGGTTATACAGCAAAGTTGGGGGTTGAGGGACTTTGGGGTGGTATGATATGTGGAATTCTTCTCCAGACCTTGCTGCTCTTGTTGATACTTTACAAAACCAATTGGAAGAAAGAGGTAGGCAATGCTTCTCACTCTCTAAAACTTTTGTGGGCATTACTTCTAGTACTACAGAAAAGTGATATTTTGCATTCACAATAA 1485 0.4411 MDAPLLDSTWAALVAEDGDYAAVKGLKEARKVFWIETKRIWQIALPIVFNIWCQYGVNSITNIFVGHLGDIELSAVSLINSVIGTFAFGFMLGMGSATETLCGQAFGAGQVHLLGVYMQRSWVILFVTSILLLPIYIFAAPILKLLGQQKDIADLAGSFAILVIPQFLSLPFNFPTQKFLQAQSKVNVIAWIGLVALILHIGFLWLLIYVLDLGLVGAALAFDVTSWGITVAQLVYVVIWCKKEWNGLSWLAIKDIWAFVRLSLASAVMLCLEVWYMMSVIVLAGHLDNAVIAVDSLSICMNINGWEGMIFIGVNAAISVRVSNELGLGHPRAAKYSVYVTVFQSLLLGILFMAIILVAKDYYAIIFTNSEVLHKAVAKLGFLLAVTMVLNSVQPVISGVAVGGGWQALVAYINIGCYYLFGLPLGFLLGYTAKLGVEGLWGGMICGILLQTLLLLLILYKTNWKKEVGNASHSLKLLWALLLVLQKSDILHSQ 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu7g0813 494 Pfam MatE 266 428 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu7g0813 494 Pfam MatE 46 205 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu7g0813 494 TIGRFAM matE: MATE efflux family protein 46 441 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Ssu7g0813 494 PANTHER PROTEIN DETOXIFICATION 10 474 - -
Ssu7g0813 494 PANTHER MULTIDRUG RESISTANCE PROTEIN 10 474 - -
Ssu7g0813 494 CDD MATE_eukaryotic 36 468 IPR045069 GO:0042910|GO:1990961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu7g0813 Ssu-Chr7 16276426 16279780 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu7g0813 K03327 - gmx:100799559 821.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu7g0813 7 16276426 16279780 Ssu7g0813 7 16276426 16279780 ECH
Ssu7g0813 7 16276426 16279780 Ssu7g0813 7 16276426 16279780 PCT